GigaScience

Latest preprint reviews

1. SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution

   This article has 7 authors:

   1. Li Charlie Xia
   2. Dongmei Ai
   3. Hojoon Lee
   4. Noemi Andor
   5. Chao Li
   6. Nancy R Zhang
   7. Hanlee P Ji

   Reviewed by GigaScience

2. Clustering trees: a visualization for evaluating clusterings at multiple resolutions

   This article has 2 authors:

   1. Luke Zappia
   2. Alicia Oshlack

   Reviewed by GigaScience

3. Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

   This article has 11 authors:

   1. Jang-il Sohn
   2. Kyoungwoo Nam
   3. Hyosun Hong
   4. Jun-Mo Kim
   5. Dajeong Lim
   6. Kyung-Tai Lee
   7. Yoon Jung Do
   8. Chang Yeon Cho
   9. Namshin Kim
   10. Han-Ha Chai
   11. Jin-Wu Nam

   Reviewed by GigaScience

4. Leveraging multiple transcriptome assembly methods for improved gene structure annotation

   This article has 5 authors:

   1. Luca Venturini
   2. Shabhonam Caim
   3. Gemy George Kaithakottil
   4. Daniel Lee Mapleson
   5. David Swarbreck

   Reviewed by GigaScience

5. Hot-starting software containers for STAR aligner

   This article has 4 authors:

   1. Pai Zhang
   2. Ling-Hong Hung
   3. Wes Lloyd
   4. Ka Yee Yeung

   Reviewed by GigaScience

6. AMBER: Assessment of Metagenome BinnERs

   This article has 7 authors:

   1. Fernando Meyer
   2. Peter Hofmann
   3. Peter Belmann
   4. Ruben Garrido-Oter
   5. Adrian Fritz
   6. Alexander Sczyrba
   7. Alice C McHardy

   Reviewed by GigaScience

7. MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

   This article has 9 authors:

   1. L M Simon
   2. S Karg
   3. A J Westermann
   4. M Engel
   5. A H A Elbehery
   6. B Hense
   7. M Heinig
   8. L Deng
   9. F J Theis

   Reviewed by GigaScience

8. YAMP: a containerized workflow enabling reproducibility in metagenomics research

   This article has 3 authors:

   1. Alessia Visconti
   2. Tiphaine C Martin
   3. Mario Falchi

   Reviewed by GigaScience

9. Arabidopsis phenotyping through geometric morphometrics

   This article has 2 authors:

   1. Carlos A Manacorda
   2. Sebastian Asurmendi

   Reviewed by GigaScience

10. Experimenting with reproducibility: a case study of robustness in bioinformatics

    This article has 3 authors:

    1. Yang-Min Kim
    2. Jean-Baptiste Poline
    3. Guillaume Dumas

    Reviewed by GigaScience