GigaScience

Latest preprint reviews

1. ANNOgesic: A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes

   This article has 3 authors:

   1. Sung-Huan Yu
   2. Jörg Vogel
   3. Konrad U. Förstner

   Reviewed by GigaScience

2. Clinker: visualizing fusion genes detected in RNA-seq data

   This article has 7 authors:

   1. Breon M Schmidt
   2. Nadia M Davidson
   3. Anthony D K Hawkins
   4. Ray Bartolo
   5. Ian J Majewski
   6. Paul G Ekert
   7. Alicia Oshlack

   Reviewed by GigaScience

3. SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution

   This article has 7 authors:

   1. Li Charlie Xia
   2. Dongmei Ai
   3. Hojoon Lee
   4. Noemi Andor
   5. Chao Li
   6. Nancy R Zhang
   7. Hanlee P Ji

   Reviewed by GigaScience

4. Clustering trees: a visualization for evaluating clusterings at multiple resolutions

   This article has 2 authors:

   1. Luke Zappia
   2. Alicia Oshlack

   Reviewed by GigaScience

5. Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

   This article has 11 authors:

   1. Jang-il Sohn
   2. Kyoungwoo Nam
   3. Hyosun Hong
   4. Jun-Mo Kim
   5. Dajeong Lim
   6. Kyung-Tai Lee
   7. Yoon Jung Do
   8. Chang Yeon Cho
   9. Namshin Kim
   10. Han-Ha Chai
   11. Jin-Wu Nam

   Reviewed by GigaScience

6. Leveraging multiple transcriptome assembly methods for improved gene structure annotation

   This article has 5 authors:

   1. Luca Venturini
   2. Shabhonam Caim
   3. Gemy George Kaithakottil
   4. Daniel Lee Mapleson
   5. David Swarbreck

   Reviewed by GigaScience

7. Hot-starting software containers for STAR aligner

   This article has 4 authors:

   1. Pai Zhang
   2. Ling-Hong Hung
   3. Wes Lloyd
   4. Ka Yee Yeung

   Reviewed by GigaScience

8. AMBER: Assessment of Metagenome BinnERs

   This article has 7 authors:

   1. Fernando Meyer
   2. Peter Hofmann
   3. Peter Belmann
   4. Ruben Garrido-Oter
   5. Adrian Fritz
   6. Alexander Sczyrba
   7. Alice C McHardy

   Reviewed by GigaScience

9. MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

   This article has 9 authors:

   1. L M Simon
   2. S Karg
   3. A J Westermann
   4. M Engel
   5. A H A Elbehery
   6. B Hense
   7. M Heinig
   8. L Deng
   9. F J Theis

   Reviewed by GigaScience

10. YAMP: a containerized workflow enabling reproducibility in metagenomics research

    This article has 3 authors:

    1. Alessia Visconti
    2. Tiphaine C Martin
    3. Mario Falchi

    Reviewed by GigaScience