GigaScience

Latest preprint reviews

1. A telomere to telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps

   This article has 18 authors:

   1. Hardip R. Patel
   2. Kirat Alreja
   3. Andre L.M. Reis
   4. J King Chang
   5. Zahra A. Chew
   6. Hyungtaek Jung
   7. Jillian M. Hammond
   8. Ira W. Deveson
   9. Aurora Ruiz-Herrera
   10. Laia Marin-Gual
   11. Clare E. Holleley
   12. Xiuwen Zhang
   13. Nicholas C. Lister
   14. Sarah Whiteley
   15. Lei Xiong
   16. Duminda S.B. Dissanayake
   17. Paul D. Waters
   18. Arthur Georges

   Reviewed by GigaScience

2. Telomere-to-telomere African wild rice ( Oryza longistaminata ) reference genome reveals segmental and structural variation

   This article has 23 authors:

   1. Xuanmin Guang
   2. Jingnan Yang
   3. Shilai Zhang
   4. Fei Guo
   5. Linzhou Li
   6. Xiaoping Lian
   7. Tao Zeng
   8. Chongyang Cai
   9. Fushu Liu
   10. Zhihao Li
   11. Yangzi Hu
   12. Dongming Fang
   13. Weiming He
   14. Sunil Kumar Sahu
   15. Wangsheng Li
   16. Haorong Lu
   17. Yuxiang Li
   18. Huan Liu
   19. Xun Xu
   20. Ying Gu
   21. Fengyi Hu
   22. Yuliang Dong
   23. Tong Wei

   Reviewed by GigaScience

3. A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes

   This article has 24 authors:

   1. Qunfei Guo
   2. Youliang Pan
   3. Wei Dai
   4. Fei Guo
   5. Tao Zeng
   6. Wanyi Chen
   7. Yaping Mi
   8. Yanshu Zhang
   9. Shuaizhen Shi
   10. Wei Jiang
   11. Huimin Cai
   12. Beiying Wu
   13. Yang Zhou
   14. Ying Wang
   15. Chentao Yang
   16. Xiao Shi
   17. Xu Yan
   18. Junyi Chen
   19. Chongyang Cai
   20. Jingnan Yang
   21. Xun Xu
   22. Ying Gu
   23. Yuliang Dong
   24. Qiye Li

   Reviewed by GigaScience

4. SeuratExtend: Streamlining Single-Cell RNA-Seq Analysis Through an Integrated and Intuitive Framework

   This article has 4 authors:

   1. Yichao Hua
   2. Linqian Weng
   3. Fang Zhao
   4. Florian Rambow

   Reviewed by GigaScience

5. Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot

   This article has 11 authors:

   1. Oscar Aramburu
   2. Belén Gómez-Pardo
   3. Paula Rodríguez-Villamayor
   4. Andrés Blanco-Hortas
   5. Jesús Lamas
   6. Pooran Dewari
   7. Diego Perojil-Morata
   8. Pierre Boudinot
   9. Daniel J. Macqueen
   10. Carmen Bouza
   11. Paulino Martínez

   Reviewed by GigaScience

6. CellBinDB: A Large-Scale Multimodal Annotated Dataset for Cell Segmentation with Benchmarking of Universal Models

   This article has 13 authors:

   1. Can Shi
   2. Jinghong Fan
   3. Zhonghan Deng
   4. Huanlin Liu
   5. Qiang Kang
   6. Yumei Li
   7. Jing Guo
   8. Jingwen Wang
   9. Jinjiang Gong
   10. Sha Liao
   11. Ao Chen
   12. Ying Zhang
   13. Mei Li

   Reviewed by GigaScience

7. Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database

   This article has 8 authors:

   1. Shuya Ikeda
   2. Zhaonan Zou
   3. Hidemasa Bono
   4. Yuki Moriya
   5. Shuichi Kawashima
   6. Toshiaki Katayama
   7. Shinya Oki
   8. Tazro Ohta

   Reviewed by GigaScience

8. The FIP 1.0 Data Set: Highly Resolved Annotated Image Time Series of 4,000 Wheat Plots Grown in Six Years

   This article has 28 authors:

   1. Lukas Roth
   2. Mike Boss
   3. Norbert Kirchgessner
   4. Helge Aasen
   5. Brenda Patricia Aguirre-Cuellar
   6. Price Pius Atuah Akiina
   7. Jonas Anderegg
   8. Joaquin Gajardo Castillo
   9. Xiaoran Chen
   10. Simon Corrado
   11. Krzysztof Cybulski
   12. Beat Keller
   13. Stefan Göbel Kortstee
   14. Lukas Kronenberg
   15. Frank Liebisch
   16. Paraskevi Nousi
   17. Corina Oppliger
   18. Gregor Perich
   19. Johannes Pfeifer
   20. Kang Yu
   21. Nicola Storni
   22. Flavian Tschurr
   23. Simon Treier
   24. Michele Volpi
   25. Hansueli Zellweger
   26. Olivia Zumsteg
   27. Andreas Hund
   28. Achim Walter

   Reviewed by GigaScience

9. CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome

   This article has 5 authors:

   1. Murilo Caminotto Barbosa
   2. João Fernando Marques da Silva
   3. Leonardo Cardoso Alves
   4. Robert D Finn
   5. Alexandre Rossi Paschoal

   Reviewed by GigaScience

10. Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles

    This article has 10 authors:

    1. Eugenie C. Yen
    2. James D. Gilbert
    3. Alice Balard
    4. Albert Taxonera
    5. Kirsten Fairweather
    6. Heather L. Ford
    7. Doko-Miles J. Thorburn
    8. Stephen J. Rossiter
    9. José M. Martín-Durán
    10. Christophe Eizaguirre

    Reviewed by GigaScience