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Latest preprint reviews

1. Context-aware simulation enables systematic optimization of long-read mapping parameters

   This article has 4 authors:

   1. Jiang Hu
   2. Dongming Fang
   3. Xin Jin
   4. Chentao Yang

   Reviewed by GigaScience

2. NanoporeDB: A Structural Resource Of Multimeric Protein Nanopores In Single-Molecule Sensing

   This article has 15 authors:

   1. Yuqian Liu
   2. Zidong Su
   3. Wenzhen Yang
   4. Denghui Li
   5. Jiawen Zhang
   6. Yuning Zhang
   7. Tao Zeng
   8. Yong Zhang
   9. Yuxiang Li
   10. Guangyi Fan
   11. Kailong Ma
   12. Shanshan Liu
   13. Xun Xu
   14. Yuliang Dong
   15. Zongan Wang

   Reviewed by GigaScience

3. Extending Protein Language Models to a Viral Genomic Scale Using Biologically Induced Sparse Attention

   This article has 8 authors:

   1. Thibaut Dejean
   2. Barbra D. Ferrell
   3. William Harrigan
   4. Zachary D. Schreiber
   5. Rajan Sawhney
   6. K. Eric Wommack
   7. Shawn W. Polson
   8. Mahdi Belcaid

   Reviewed by GigaScience

4. KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences

   This article has 9 authors:

   1. Brook E. Santangelo
   2. Harshad Hegde
   3. J. Harry Caufield
   4. Justin Reese
   5. Tomas Kliegr
   6. Lawrence E. Hunter
   7. Catherine A. Lozupone
   8. Christopher J. Mungall
   9. Marcin P. Joachimiak

   Reviewed by GigaScience

5. ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data

   This article has 12 authors:

   1. Danni Luo
   2. Sophie Robertson
   3. Yuanchun Zhan
   4. Ruichen Rong
   5. Shidan Wang
   6. Xi Jiang
   7. Sen Yang
   8. Suzette Palmer
   9. Liwei Jia
   10. Qiwei Li
   11. Guanghua Xiao
   12. Xiaowei Zhan

   Reviewed by GigaScience

6. Comparison of Deep Learning Approaches for Extreme Low-SNR Image Restoration

   This article has 6 authors:

   1. Nasreen Elizabeth Buhn
   2. Sriya Reddy Adunur
   3. Joseph Hamilton
   4. Summer Levis
   5. Guy M. Hagen
   6. Jonathan D. Ventura

   Reviewed by GigaScience

7. ChatMDV: Democratising Bioinformatics Analysis Using Large Language Models

   This article has 9 authors:

   1. Maria Kiourlappou
   2. Peter Todd
   3. Yaxuan Kong
   4. Jayesh Hire
   5. Sibgathullah Furquan Nawab Mohammed
   6. Martin Sergeant
   7. Stefan Zohren
   8. Jim Hughes
   9. Stephen Taylor

   Reviewed by GigaScience

8. CPSM: R-package of an Automated Machine Learning Pipeline for Predicting the Survival Probability of Single Cancer Patient

   This article has 4 authors:

   1. Harpreet Kaur
   2. Pijush Das
   3. Kevin Camphausen
   4. Uma Shankavaram

   Reviewed by GigaScience

9. Breaking the cold chain: solutions for room temperature preservation of mosquitoes leading to high quality reference genomes

   This article has 5 authors:

   1. Fiona Teltscher
   2. Petra Korlević
   3. Edel Sheerin
   4. Alex Makunin
   5. Mara K N Lawniczak

   Reviewed by GigaScience

10. Cell type transcriptomics reveal shared genetic mechanisms in Alzheimer’s and Parkinson’s disease

    This article has 11 authors:

    1. Anwesha Bhattacharya
    2. Edward A. Fon
    3. Alain Dagher
    4. Yasser Iturria-Medina
    5. Jo Anne Stratton
    6. Chloe Savignac
    7. Jack Stanley
    8. Liam Hodgson
    9. Badr Ait Hammou
    10. David A Bennett
    11. Danilo Bzdok

    Reviewed by GigaScience