Latest preprint reviews

  1. dbGIST: An LLM-Assisted Multi-Omics Resource for Target Exploration and Cross-Dataset Validation in Gastrointestinal Stromal Tumors

    This article has 20 authors:
    1. Zhao Sun
    2. Qian Zhao
    3. Jie-Han Li
    4. Jia-Jing Li
    5. Hao Liu
    6. Yan-Xu Guo
    7. Ya-Dong Tang
    8. Fei Yang
    9. Xin Liu
    10. San-Fei Peng
    11. Wu-nan Mi
    12. Ge Zhang
    13. Zhen Zhang
    14. Ming-Liang Yuan
    15. Guang-Hui Li
    16. Yun-Fei Wang
    17. Chao Liu
    18. Sheng-Lei Li
    19. Jing-Hua Yang
    20. Yang Fu
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The paper provides a valuable, foundational dataset that will undoubtedly provide substantial value to the cancer research community. The aggregation and harmonization of a broad, rich, multi-omic dataset is convincing and will potentially support further downstream research on GIST, which currently has poor supporting datasets. Support for the accompanying claims is more incomplete, however: the biological demonstration rests on a single gene tested by one approach, several analyses lack sample sizes and multiple-testing correction, the claims made for the LLM assistant are not backed by direct evaluation, and the curated data matrices would ideally be deposited independently of the web.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  2. Functional Convergence of Genetically Diverse B-Cell Receptors in Simian-HIV Infected Rhesus Macaques

    This article has 16 authors:
    1. Shengli Song
    2. Hui Li
    3. Chen-Hao Yeh
    4. Akiko Watanabe
    5. Masayuki Kuraoka
    6. Hongmei Gao
    7. Xiaoying Shen
    8. Celia C. LaBranche
    9. Wilton B. Williams
    10. Kevin O. Saunders
    11. M. Anthony Moody
    12. Kevin Wiehe
    13. David C. Montefiori
    14. Barton. F. Haynes
    15. George M. Shaw
    16. Garnett Kelsoe
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable study characterizes how antibody responses converge on similar functional solutions despite diverse genetic backgrounds, providing a resource that is of importance in understanding immune responses and informing vaccine research. The evidence is solid, with extensive and well-executed analyses supporting the primary findings, although broader conclusions regarding vaccine design would benefit from more cautious interpretation and fuller discussion of the study's limitations. The work will be of interest to researchers studying antibody responses, viral evolution, and vaccine development.

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  3. Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    This article has 2 authors:
    1. Marlin D Figgins
    2. Trevor Bedford
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      In this important work, the authors develop methods to forecast epidemic growth from viral sequencing data alone. The evidence for the usefulness of the approach is solid, but some justifications and methodological details are incomplete. This study should be of broad interest to the community interested in viral dynamics and epidemiology.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  4. Quantitative modelling of biological response dynamics reveals novel patterns in plant volatile signalling

    This article has 5 authors:
    1. Jamie M. Waterman
    2. Gareth J. Moore
    3. Loren K. Amdahl-Culleton
    4. Sara Hoefer
    5. Matthias Erb
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study presents the development of a model to quantify the dynamics of stress-induced volatile emissions in plants and identify biologically relevant differences in these responses. The model is based on a convincing methodology and represents a starting point for studies of similar responses in other plants or investigations of induced phenotypes in different biological systems.

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  5. Virtual reality reveals fine-scale alterations in behaviour following loss of the ADHD-linked gene adgrl3.1 in zebrafish

    This article has 5 authors:
    1. Phoebe Reynolds
    2. Emily Read
    3. Caitlin Daly-East
    4. Matthew O Parker
    5. Robert Hindges
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The study presents valuable findings on early behavioral phenotypes that arise in an ADHD-associated adgrl3.1 mutant zebrafish, using a new behavioral approach with a closed-loop OMR assay. The evidence supporting the claims of the authors is solid; however, the validation of the method and analysis is incomplete and would benefit from more rigorous approaches and validation practices. This work will be of broad interest to developmental biologists and behavioral neuroscientists.

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
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