Arcadia Science

Latest preprint reviews

1. Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome

   This article has 22 authors:

   1. Min Wang
   2. Lucas J. Osborn
   3. Sunit Jain
   4. Xiandong Meng
   5. Allison Weakley
   6. Jia Yan
   7. William J. Massey
   8. Venkateshwari Varadharajan
   9. Anthony Horak
   10. Rakhee Banerjee
   11. Daniela S. Allende
   12. E. Ricky Chan
   13. Adeline M. Hajjar
   14. Zeneng Wang
   15. Alejandra Dimas
   16. Aishan Zhao
   17. Kazuki Nagashima
   18. Alice G. Cheng
   19. Steven Higginbottom
   20. Stanley L. Hazen
   21. J. Mark Brown
   22. Michael A. Fischbach

   Reviewed by Arcadia Science

2. Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies

   This article has 15 authors:

   1. Francesco Cicconardi
   2. Edoardo Milanetti
   3. Erika C. Pinheiro de Castro
   4. Anyi Mazo-Vargas
   5. Steven M. Van Belleghem
   6. Angelo Alberto Ruggieri
   7. Pasi Rastas
   8. Joseph Hanly
   9. Elizabeth Evans
   10. Chris D. Jiggins
   11. W. Owen McMillan
   12. Riccardo Papa
   13. Daniele Di Marino
   14. Arnaud Martin
   15. Stephen H. Montgomery

   Reviewed by Arcadia Science

3. Molecular mechanisms of tubulogenesis revealed in the sea star hydro-vascular organ

   This article has 4 authors:

   1. Margherita Perillo
   2. S. Zachary Swartz
   3. Cosmo Pieplow
   4. Gary M. Wessel

   Reviewed by Arcadia Science

4. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria

   This article has 7 authors:

   1. Simon Roux
   2. Antonio Pedro Camargo
   3. Felipe H. Coutinho
   4. Shareef M. Dabdoub
   5. Bas E. Dutilh
   6. Stephen Nayfach
   7. Andrew Tritt

   Reviewed by Arcadia Science

5. Algae drive convergent bacterial community assembly at low dilution frequency

   This article has 2 authors:

   1. Kaumudi H. Prabhakara
   2. Seppe Kuehn

   Reviewed by Arcadia Science

6. Precise transcript targeting by CRISPR-Csm complexes

   This article has 3 authors:

   1. David Colognori
   2. Marena Trinidad
   3. Jennifer A. Doudna

   Reviewed by Arcadia Science

7. A stress-responsive p38 signaling axis in choanoflagellates

   This article has 7 authors:

   1. Florentine U. Rutaganira
   2. Maxwell C. Coyle
   3. Maria H. T. Nguyen
   4. Iliana Hernandez
   5. Alex P. Scopton
   6. Arvin C. Dar
   7. Nicole King

   Reviewed by Life Science Editors Foundation, Arcadia Science

8. Protein evidence of unannotated ORFs in Drosophila reveals diversity in the evolution and properties of young proteins

   This article has 2 authors:

   1. Eric B Zheng
   2. Li Zhao

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     By integrating in silico predictions and mass-spectrometry, this manuscript tackles the problem of annotating the currently nameless stretches of genomic sequence that actually code for proteins. The hundreds of protein coding fruit fly genes described here offer new inroads for studying some of the very youngest functional elements in genomes, particularly those that have recently emerged from non-coding DNA sequences. To clarify the biological significance of the present study, the authors should both highlight the genes mostly like to encode functional products and conduct a comparison to published datasets that used different methods to identify such genes in fruit flies.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

   Reviewed by Arcadia Science, eLife

9. Tunnelling nanotube formation is driven by Eps8/IRSp53‐dependent linear actin polymerization

   This article has 11 authors:

   1. J Michael Henderson
   2. Nina Ljubojevic
   3. Sevan Belian
   4. Thibault Chaze
   5. Daryl Castaneda
   6. Aude Battistella
   7. Quentin Giai Gianetto
   8. Mariette Matondo
   9. Stéphanie Descroix
   10. Patricia Bassereau
   11. Chiara Zurzolo

   Reviewed by Arcadia Science, Review Commons

10. Mechanical compression induces persistent bacterial growth during bacteriophage predation

    This article has 2 authors:

    1. Guy Mason
    2. Enrique R. Rojas

    Reviewed by Arcadia Science