Arcadia Science

Latest preprint reviews

1. An evolutionary cell biology perspective into the diverging mechanisms of clathrin-mediated endocytosis in dikarya fungi

   This article has 4 authors:

   1. Andrea Picco
   2. Christopher P. Toret
   3. Anne-Sophie Rivier-Cordey
   4. Marko Kaksonen

   Reviewed by Arcadia Science

2. The evolutionary origins and ancestral features of septins

   This article has 6 authors:

   1. Samed Delic
   2. Brent Shuman
   3. Shoken Lee
   4. Shirin Bahmanyar
   5. Michelle Momany
   6. Masayuki Onishi

   Reviewed by Arcadia Science

3. Machine Learning Assisted Spectral Fingerprinting for Immune Cell Phenotyping

   This article has 5 authors:

   1. Aceer Nadeem
   2. Sarah Lyons
   3. Aidan Kindopp
   4. Amanda Jamieson
   5. Daniel Roxbury

   Reviewed by Arcadia Science

4. Evaluating generalizability of artificial intelligence models for molecular datasets

   This article has 6 authors:

   1. Yasha Ektefaie
   2. Andrew Shen
   3. Daria Bykova
   4. Maximillian G. Marin
   5. Marinka Zitnik
   6. Maha Farhat

   Reviewed by Arcadia Science

5. Assessment of Gene Set Enrichment Analysis using curated RNA-seq-based benchmarks

   This article has 2 authors:

   1. Julián Candia
   2. Luigi Ferrucci

   Reviewed by Arcadia Science

6. Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools

   This article has 136 authors:

   1. Dan Biderman
   2. Matthew R. Whiteway
   3. Cole Hurwitz
   4. Nicholas Greenspan
   5. Robert S. Lee
   6. Ankit Vishnubhotla
   7. Richard Warren
   8. Federico Pedraja
   9. Dillon Noone
   10. Michael M. Schartner
   11. Julia M. Huntenburg
   12. Anup Khanal
   13. Guido T. Meijer
   14. Jean-Paul Noel
   15. Alejandro Pan-Vazquez
   16. Karolina Z. Socha
   17. Anne E. Urai
   18. The International Brain Laboratory
   19. Larry Abbot
   20. Luigi Acerbi
   21. Valeria Aguillon-Rodriguez
   22. Mandana Ahmadi
   23. Jaweria Amjad
   24. Dora Angelaki
   25. Jaime Arlandis
   26. Zoe C. Ashwood
   27. Kush Banga
   28. Hailey Barrell
   29. Hannah M. Bayer
   30. Brandon Benson
   31. Julius Benson
   32. Jai Bhagat
   33. Dan Birman
   34. Niccolò Bonacchi
   35. Kcenia Bougrova
   36. Julien Boussard
   37. Sebastian A. Bruijns
   38. E. Kelly Buchanan
   39. Robert Campbell
   40. Matteo Carandini
   41. Joana A. Catarino
   42. Fanny Cazettes
   43. Gaelle A. Chapuis
   44. Anne K. Churchland
   45. Yang Dan
   46. Felicia Davatolhagh
   47. Peter Dayan
   48. Sophie Denève
   49. Eric E. J. DeWitt
   50. Ling Liang Dong
   51. Tatiana Engel
   52. Michele Fabbri
   53. Mayo Faulkner
   54. Robert Fetcho
   55. Ila Fiete
   56. Charles Findling
   57. Laura Freitas-Silva
   58. Surya Ganguli
   59. Berk Gercek
   60. Naureen Ghani
   61. Ivan Gordeliy
   62. Laura M. Haetzel
   63. Kenneth D. Harris
   64. Michael Hausser
   65. Naoki Hiratani
   66. Sonja Hofer
   67. Fei Hu
   68. Felix Huber
   69. Cole Hurwitz
   70. Anup Khanal
   71. Christopher S. Krasniak
   72. Sanjukta Krishnagopal
   73. Michael Krumin
   74. Debottam Kundu
   75. Agnès Landemard
   76. Christopher Langdon
   77. Christopher Langfield
   78. Inês Laranjeira
   79. Peter Latham
   80. Petrina Lau
   81. Hyun Dong Lee
   82. Ari Liu
   83. Zachary F. Mainen
   84. Amalia Makri-Cottington
   85. Hernando Martinez-Vergara
   86. Brenna McMannon
   87. Isaiah McRoberts
   88. Guido T. Meijer
   89. Maxwell Melin
   90. Leenoy Meshulam
   91. Kim Miller
   92. Nathaniel J. Miska
   93. Catalin Mitelut
   94. Zeinab Mohammadi
   95. Thomas Mrsic-Flogel
   96. Masayoshi Murakami
   97. Jean-Paul Noel
   98. Kai Nylund
   99. Farideh Oloomi
   100. Alejandro Pan-Vazquez
   101. Liam Paninski
   102. Alberto Pezzotta
   103. Samuel Picard
   104. Jonathan W. Pillow
   105. Alexandre Pouget
   106. Florian Rau
   107. Cyrille Rossant
   108. Noam Roth
   109. Nicholas A. Roy
   110. Kamron Saniee
   111. Rylan Schaeffer
   112. Michael M. Schartner
   113. Yanliang Shi
   114. Carolina Soares
   115. Karolina Z. Socha
   116. Cristian Soitu
   117. Nicholas A. Steinmetz
   118. Karel Svoboda
   119. Marsa Taheri
   120. Charline Tessereau
   121. Anne E. Urai
   122. Erdem Varol
   123. Miles J. Wells
   124. Steven J. West
   125. Matthew R. Whiteway
   126. Charles Windolf
   127. Olivier Winter
   128. Ilana Witten
   129. Lauren E. Wool
   130. Zekai Xu
   131. Han Yu
   132. Anthony M. Zador
   133. Yizi Zhang
   134. John P. Cunningham
   135. Nathaniel B. Sawtell
   136. Liam Paninski

   Reviewed by Arcadia Science

7. Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25

   This article has 11 authors:

   1. Paul Richard J Yulo
   2. Nicolas Desprat
   3. Monica L Gerth
   4. Barbara Ritzl-Rinkenberger
   5. Andrew D Farr
   6. Yunhao Liu
   7. Xue-Xian Zhang
   8. Michael Miller
   9. Felipe Cava
   10. Paul B Rainey
   11. Heather L Hendrickson

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This important study combines convincing evolution experiments with molecular and genetic techniques to study how a genetic lesion in MreB that causes rod-shaped cells to become spherical, with concomitant deleterious fitness effects, can be rescued by natural selection. The detailed mechanistic investigation increases our understanding of how mreB contributes to cell wall synthesis and shows how compensatory mutations may reestablish its homogeneity.

   Reviewed by eLife, Arcadia Science

8. Predicting microbial growth conditions from amino acid composition

   This article has 6 authors:

   1. Tyler P. Barnum
   2. Alexander Crits-Christoph
   3. Michael Molla
   4. Paul Carini
   5. Henry H. Lee
   6. Nili Ostrov

   Reviewed by Arcadia Science

9. Dueling Endogenous Viral-Like Sequences Control Synaptic Plasticity

   This article has 9 authors:

   1. P. Githure M’Angale
   2. Adrienne Lemieux
   3. Yumeng Liu
   4. Jasmine Graslie
   5. Shuhao Wang
   6. Alfred Simkin
   7. Vivian Budnik
   8. Brian A. Kelch
   9. Travis Thomson

   Reviewed by Arcadia Science

10. The Diverse Evolutionary Histories of Domesticated Metaviral Capsid Genes in Mammals

    This article has 6 authors:

    1. William S Henriques
    2. Janet M Young
    3. Artem Nemudryi
    4. Anna Nemudraia
    5. Blake Wiedenheft
    6. Harmit S Malik

    Reviewed by Arcadia Science