ProtSpace: A Tool for Visualizing Protein Space

  1. Tobias Senoner
  2. Tobias Olenyi
  3. Michael Heinzinger
  4. Anton Spannagl
  5. George Bouras
  6. Burkhard Rost
  7. Ivan Koludarov

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  1. Version published to 10.1016/j.jmb.2025.168940
  2. Arcadia Science

    Thank you for sharing about ProteinCartography. It's great to see parallel approaches emerging for protein space visualization. Would be interesting to merge the best of both tools into one.

  3. Arcadia Science

    own

    We recently released a snakemake pipeline for exploring protein structural spaces, generating using TM-score similarity matrices, called ProteinCartography. It's cool to see your convergent solution to the problem of visualizing protein similarity applied to embeddings!

  4. Version published to 10.1101/2024.11.30.626168v1 on bioRxiv