Arcadia Science

Latest preprint reviews

1. Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo

   This article has 8 authors:

   1. Shenzhi Chen
   2. Vincent Loubiere
   3. Ethan W. Hollingsworth
   4. Sandra H. Jacinto
   5. Atrin Dizehchi
   6. Jacob Schreiber
   7. Evgeny Z. Kvon
   8. Alexander Stark

   Reviewed by Arcadia Science

2. ProFam: Open-Source Protein Family Language Modelling for Fitness Prediction and Design

   This article has 11 authors:

   1. Jude Wells
   2. Alex Hawkins Hooker
   3. Micha Livne
   4. Weining Lin
   5. David Miller
   6. Christian Dallago
   7. Nicola Bordin
   8. Brooks Paige
   9. Burkhard Rost
   10. Christine Orengo
   11. Michael Heinzinger

   Reviewed by Arcadia Science

3. RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

   This article has 2 authors:

   1. Zinnia Ma
   2. Neville P. Bethel

   Reviewed by Arcadia Science

4. Label-free biochemical imaging and timepoint analysis of neural organoids via deep learning-enhanced Raman microspectroscopy

   This article has 7 authors:

   1. Dimitar Georgiev
   2. Ruoxiao Xie
   3. Daniel Reumann
   4. Xiaoyu Zhao
   5. Álvaro Fernández-Galiana
   6. Mauricio Barahona
   7. Molly M. Stevens

   Reviewed by Arcadia Science

5. Beyond P-values: A Multi-Metric Framework for Robust Feature Selection and Predictive Modeling

   This article has 6 authors:

   1. Raelynn Chen
   2. Attri Ghosh
   3. Jie Hu
   4. Yong Chen
   5. Jason H. Moore
   6. Ruowang Li

   Reviewed by Arcadia Science

6. Weakly supervised learning uncovers phenotypic signatures in single-cell data

   This article has 5 authors:

   1. Anastasia Litinetskaya
   2. Soroor Hediyeh-zadeh
   3. Amir Ali Moinfar
   4. Mohammad Lotfollahi
   5. Fabian J. Theis

   Reviewed by Arcadia Science

7. Geno-pheno characterization of crop rhizospheres: An integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

   This article has 7 authors:

   1. Yejin Son
   2. Peisheng He
   3. Mathew Baldwin
   4. Guangyu Li
   5. Zijian Wang
   6. April Z. Gu
   7. Jenny Kao-Kniffin

   Reviewed by Arcadia Science

8. Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota)

   This article has 13 authors:

   1. Philipp Radler
   2. Tobias Viehboeck
   3. Zhen-Hao Luo
   4. Nevena Maslać
   5. Katharina Schmidt
   6. Robert Hauschild
   7. Masaru Nobu
   8. Silvia Bulgheresi
   9. Theresia E.B. Stradal
   10. Klemens Rottner
   11. Hiroyuki Imachi
   12. Michael Sixt
   13. Christa Schleper

   Reviewed by Arcadia Science

9. The Rhizarian amoeba Filoreta ramosa develops a neuron-like arborized network using conserved cytoskeletal mechanisms

   This article has 2 authors:

   1. Sarah L. Guest
   2. Scott C. Dawson

   Reviewed by Arcadia Science

10. RamanOmics Decodes Spatial Vibrational-Molecular Architecture and Rewiring in Aging and Repair

    This article has 23 authors:

    1. Ke Zhang
    2. Xingjian Chen
    3. Francesco Monticolo
    4. Salvatore Sorrentino
    5. Haochun Huang
    6. Claire Callahan
    7. Yueqing Qiao
    8. Judy Zhou
    9. Sonia Brodowska
    10. Styliani Sapantzi
    11. Jianhuan Qi
    12. Yinghan Wu
    13. Thai Nam Son Dang
    14. Francesca Viggiani
    15. Chia-Kang Ho
    16. Yanxin Xu
    17. Koseki J. Kobayashi-Kirschvink
    18. Thang Mung
    19. Hemali Phatnani
    20. Zhixun Dou
    21. Jeon Woong Kang
    22. Peter T. C. So
    23. Jian Shu

    Reviewed by Arcadia Science