Arcadia Science

Latest preprint reviews

1. A Cross-Species Generative Cell Atlas Across 1.5 Billion Years of Evolution: The TranscriptFormer Single-cell Model

   This article has 12 authors:

   1. James D Pearce
   2. Sara E Simmonds
   3. Gita Mahmoudabadi
   4. Lakshmi Krishnan
   5. Giovanni Palla
   6. Ana-Maria Istrate
   7. Alexander Tarashansky
   8. Benjamin Nelson
   9. Omar Valenzuela
   10. Donghui Li
   11. Stephen R Quake
   12. Theofanis Karaletsos

   Reviewed by Arcadia Science

2. Antibody affinity engineering using antibody repertoire data and machine learning

   This article has 5 authors:

   1. Lena Erlach
   2. Simon Friedensohn
   3. Daniel Neumeier
   4. Derek M. Mason
   5. Sai T. Reddy

   Reviewed by Arcadia Science

3. Random UV Mutagenesis for the production of Chlorella vulgaris mutants with low chlorophyll content for the food industry

   This article has 7 authors:

   1. Ivan N. Ivanov
   2. Jiří Kopecký
   3. Karolína Štěrbová
   4. Pavel Hrouzek
   5. Martin Lukeš
   6. Kateřina Bišová
   7. Setyo Budi Kurniawan

   Reviewed by Arcadia Science

4. The antifungal and other bioactive properties of the volatilome of Streptomyces scabiei

   This article has 8 authors:

   1. Nudzejma Stulanovic
   2. Djulia Bensaada
   3. Loïc Belde
   4. Delphine Adam
   5. Marc Hanikenne
   6. Jean-François Focant
   7. Pierre-Hugues Stefanuto
   8. Sébastien Rigali

   Reviewed by Arcadia Science

5. Eukaryotes’ closest relatives are internally simple syntrophic archaea

   This article has 23 authors:

   1. Hiroyuki Imachi
   2. Masaru K. Nobu
   3. Shun’ichi Ishii
   4. Yuga Hirakata
   5. Tetsuro Ikuta
   6. Yuta Isaji
   7. Makoto Miyata
   8. Masayuki Miyazaki
   9. Yuki Morono
   10. Kazuyoshi Murata
   11. Satoshi Nakagawa
   12. Miyuki Ogawara
   13. Satoshi Okada
   14. Yumi Saito
   15. Sanae Sakai
   16. Shigeru Shimamura
   17. Yuhei O. Tahara
   18. Yoshihiro Takaki
   19. Yoshinori Takano
   20. Eiji Tasumi
   21. Katsuyuki Uematsu
   22. Toshihiro Yoshimura
   23. Ken Takai

   Reviewed by Arcadia Science

6. Balancing stability and flexibility when reshaping archaeal membranes

   This article has 5 authors:

   1. Miguel Amaral
   2. Felix Frey
   3. Xiuyun Jiang
   4. Buzz Baum
   5. Anđela Šarić

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This fundamental study characterizes the mechanics and stability of bolalipids from archaeal membranes using a minimalist, physics-based computational model. The authors present a robust mesoscale model of bolalipids-containing membranes, systematically evaluating it across diverse membrane configurations. The results are compelling, demonstrating that the incorporation of bolalipids and regular bilayer lipids in archaeal membranes significantly enhances membrane fluidity and structural stability.

   Reviewed by eLife, Arcadia Science

7. Toward De Novo Protein Design from Natural Language

   This article has 26 authors:

   1. Fengyuan Dai
   2. Shiyang You
   3. Yudian Zhu
   4. Yuan Gao
   5. Lihao Fu
   6. Xibin Zhou
   7. Jin Su
   8. Chentong Wang
   9. Yuliang Fan
   10. Xiaoxiao Ma
   11. Xianjun Deng
   12. Letong Yu
   13. Hui Qian
   14. Yan He
   15. Yitao Ke
   16. Chenchen Han
   17. Xing Chang
   18. Liangzhen Zheng
   19. Sheng Wang
   20. Yajie Wang
   21. Anping Zeng
   22. Shunzhi Wang
   23. Tong Si
   24. Jianming Liu
   25. Hongyuan Lu
   26. Fajie Yuan

   Reviewed by Arcadia Science

8. Varicose-projection astrocytes: a reactive phenotype associated with neuropathology

   This article has 21 authors:

   1. Caterina Ciani
   2. Giulio Pistorio
   3. Simona Giancola
   4. Marika Mearelli
   5. Francesca Emma Mongelli
   6. Delaram Forouzeh
   7. Luca Mio
   8. Paula Ramos-Gonzalez
   9. Carlos Matute
   10. Ugne Kuliesiute
   11. Sari Elena Dötterer
   12. Gediminas Luksys
   13. Saulius Rocka
   14. Urte Neniskyte
   15. Marya Ayub
   16. Jean-Marie Graïc
   17. Francesco Petrelli
   18. Alexei Verkhratsky
   19. Nunzio Iraci
   20. Fabio Cavaliere
   21. Carmen Falcone

   Reviewed by Arcadia Science

9. Self-Organizing Neural Networks in Novel Moving Bodies: Anatomical, Behavioral, and Transcriptional Characterization of a Living Construct with a Nervous System

   This article has 7 authors:

   1. Haleh Fotowat
   2. Laurie O’Neill
   3. Léo Pio-Lopez
   4. Megan Sperry
   5. Patrick Erickson
   6. Tiffany Lin
   7. Michael Levin

   Reviewed by Arcadia Science

10. Inferring genotype-phenotype maps using attention models

    This article has 6 authors:

    1. Krishna Rijal
    2. Caroline M. Holmes
    3. Samantha Petti
    4. Gautam Reddy
    5. Michael M. Desai
    6. Pankaj Mehta

    Reviewed by Arcadia Science