Systems Biology

Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions

This article has 43 authors:
1. Michael R. Filbin
2. Arnav Mehta
3. Alexis M. Schneider
4. Kyle R. Kays
5. Jamey R. Guess
6. Matteo Gentili
7. Bánk G. Fenyves
8. Nicole C. Charland
9. Anna L.K. Gonye
10. Irena Gushterova
11. Hargun K. Khanna
12. Thomas J. LaSalle
13. Kendall M. Lavin-Parsons
14. Brendan M. Lilley
15. Carl L. Lodenstein
16. Kasidet Manakongtreecheep
17. Justin D. Margolin
18. Brenna N. McKaig
19. Maricarmen Rojas-Lopez
20. Brian C. Russo
21. Nihaarika Sharma
22. Jessica Tantivit
23. Molly F. Thomas
24. Robert E. Gerszten
25. Graham S. Heimberg
26. Paul J. Hoover
27. David J. Lieb
28. Brian Lin
29. Debby Ngo
30. Karin Pelka
31. Miguel Reyes
32. Christopher S. Smillie
33. Avinash Waghray
34. Thomas E. Wood
35. Amanda S. Zajac
36. Lori L. Jennings
37. Ida Grundberg
38. Roby P. Bhattacharyya
39. Blair Alden Parry
40. Alexandra-Chloé Villani
41. Moshe Sade-Feldman
42. Nir Hacohen
43. Marcia B. Goldberg
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This article has 1 evaluationAppears in 1 listLatest version May 1, 2021Latest activity Nov 8, 2020
Probing the Dynamic Structure–Function and Structure-Free Energy Relationships of the Coronavirus Main Protease with Biodynamics Theory

This article has 3 authors:
1. Hongbin Wan
2. Vibhas Aravamuthan
3. Robert A. Pearlstein
Reviewed by ScreenIT

This article has 1 evaluationAppears in 1 listLatest version Nov 6, 2020Latest activity Jul 21, 2020
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research

This article has 19 authors:
1. Gergely Zahoránszky-Kőhalmi
2. Vishal B. Siramshetty
3. Praveen Kumar
4. Manideep Gurumurthy
5. Busola Grillo
6. Biju Mathew
7. Dimitrios Metaxatos
8. Mark Backus
9. Tim Mierzwa
10. Reid Simon
11. Ivan Grishagin
12. Laura Brovold
13. Ewy A. Mathé
14. Matthew D. Hall
15. Samuel G. Michael
16. Alexander G. Godfrey
17. Jordi Mestres
18. Lars J. Jensen
19. Tudor I. Oprea
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This article has 1 evaluationAppears in 1 listLatest version Jan 20, 2022Latest activity Nov 6, 2020
The Coronavirus Network Explorer: mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function

This article has 6 authors:
1. Andreas Krämer
2. Jean-Noël Billaud
3. Stuart Tugendreich
4. Dan Shiffman
5. Martin Jones
6. Jeff Green
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This article has 1 evaluationAppears in 1 listLatest version May 3, 2021Latest activity Sep 16, 2020
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

This article has 139 authors:
1. Marek Ostaszewski
2. Anna Niarakis
3. Alexander Mazein
4. Inna Kuperstein
5. Robert Phair
6. Aurelio Orta-Resendiz
7. Vidisha Singh
8. Sara Sadat Aghamiri
9. Marcio Luis Acencio
10. Enrico Glaab
11. Andreas Ruepp
12. Gisela Fobo
13. Corinna Montrone
14. Barbara Brauner
15. Goar Frishman
16. Luis Cristóbal Monraz Gómez
17. Julia Somers
18. Matti Hoch
19. Shailendra Kumar Gupta
20. Julia Scheel
21. Hanna Borlinghaus
22. Tobias Czauderna
23. Falk Schreiber
24. Arnau Montagud
25. Miguel Ponce de Leon
26. Akira Funahashi
27. Yusuke Hiki
28. Noriko Hiroi
29. Takahiro G. Yamada
30. Andreas Dräger
31. Alina Renz
32. Muhammad Naveez
33. Zsolt Bocskei
34. Francesco Messina
35. Daniela Börnigen
36. Liam Fergusson
37. Marta Conti
38. Marius Rameil
39. Vanessa Nakonecnij
40. Jakob Vanhoefer
41. Leonard Schmiester
42. Muying Wang
43. Emily E. Ackerman
44. Jason Shoemaker
45. Jeremy Zucker
46. Kristie Oxford
47. Jeremy Teuton
48. Ebru Kocakaya
49. Gökçe Yağmur Summak
50. Kristina Hanspers
51. Martina Kutmon
52. Susan Coort
53. Lars Eijssen
54. Friederike Ehrhart
55. D. A. B. Rex
56. Denise Slenter
57. Marvin Martens
58. Nhung Pham
59. Robin Haw
60. Bijay Jassal
61. Lisa Matthews
62. Marija Orlic-Milacic
63. Andrea Senff Ribeiro
64. Karen Rothfels
65. Veronica Shamovsky
66. Ralf Stephan
67. Cristoffer Sevilla
68. Thawfeek Varusai
69. Jean-Marie Ravel
70. Rupsha Fraser
71. Vera Ortseifen
72. Silvia Marchesi
73. Piotr Gawron
74. Ewa Smula
75. Laurent Heirendt
76. Venkata Satagopam
77. Guanming Wu
78. Anders Riutta
79. Martin Golebiewski
80. Stuart Owen
81. Carole Goble
82. Xiaoming Hu
83. Rupert W. Overall
84. Dieter Maier
85. Angela Bauch
86. Benjamin M. Gyori
87. John A. Bachman
88. Carlos Vega
89. Valentin Grouès
90. Miguel Vazquez
91. Pablo Porras
92. Luana Licata
93. Marta Iannuccelli
94. Francesca Sacco
95. Anastasia Nesterova
96. Anton Yuryev
97. Anita de Waard
98. Denes Turei
99. Augustin Luna
100. Ozgun Babur
101. Sylvain Soliman
102. Alberto Valdeolivas
103. Marina Esteban- Medina
104. Maria Peña-Chilet
105. Kinza Rian
106. Tomáš Helikar
107. Bhanwar Lal Puniya
108. Dezso Modos
109. Agatha Treveil
110. Marton Olbei
111. Bertrand De Meulder
112. Aurélien Dugourd
113. Aurélien Naldi
114. Vincent Noë
115. Laurence Calzone
116. Chris Sander
117. Emek Demir
118. Tamas Korcsmaros
119. Tom C. Freeman
120. Franck Augé
121. Jacques S. Beckmann
122. Jan Hasenauer
123. Olaf Wolkenhauer
124. Egon L. Wilighagen
125. Alexander R. Pico
126. Chris T. Evelo
127. Marc E. Gillespie
128. Lincoln D. Stein
129. Henning Hermjakob
130. Peter D’Eustachio
131. Julio Saez-Rodriguez
132. Joaquin Dopazo
133. Alfonso Valencia
134. Hiroaki Kitano
135. Emmanuel Barillot
136. Charles Auffray
137. Rudi Balling
138. Reinhard Schneider
139. the COVID-19 Disease Map Community
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This article has 2 evaluationsAppears in 1 listLatest version Feb 26, 2021Latest activity Nov 2, 2020
A 3D structural SARS-CoV-2–human interactome to explore genetic and drug perturbations

This article has 9 authors:
1. Shayne D. Wierbowski
2. Siqi Liang
3. Yuan Liu
4. You Chen
5. Shagun Gupta
6. Nicole M. Andre
7. Steven M. Lipkin
8. Gary R. Whittaker
9. Haiyuan Yu
Reviewed by ScreenIT

This article has 1 evaluationAppears in 1 listLatest version Nov 29, 2021Latest activity Oct 15, 2020
Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection

This article has 2 authors:
1. Piyush Nanda
2. Amit Ghosh
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This article has 1 evaluationAppears in 1 listLatest version Apr 9, 2021Latest activity Nov 30, 2020
Scalable workflow for characterization of cell-cell communication in COVID-19 patients

This article has 8 authors:
1. Yingxin Lin
2. Lipin Loo
3. Andy Tran
4. David M. Lin
5. Cesar Moreno
6. Daniel Hesselson
7. G. Gregory Neely
8. Jean Y. H. Yang
Reviewed by ScreenIT

This article has 1 evaluationAppears in 1 listLatest version Oct 5, 2022Latest activity Dec 31, 2020
Tissue Level Profiling of SARS-CoV-2 antivirals in mice to predict their effects: comparing Remdesivir’s active metabolite GS-441 524 vs. the clinically failed Hydroxychloroquine

This article has 11 authors:
1. Oliver Scherf-Clavel
2. Edith Kaczmarek
3. Martina Kinzig
4. Bettina Friedl
5. Malte Feja
6. Rainer Höhl
7. Roland Nau
8. Ulrike Holzgrabe
9. Manuela Gernert
10. Franziska Richter
11. Fritz Sörgel
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This article has 1 evaluationAppears in 1 listLatest version Nov 6, 2020Latest activity Sep 21, 2020
A SARS-CoV-2 – host proximity interactome

This article has 18 authors:
1. Payman Samavarchi-Tehrani
2. Hala Abdouni
3. James D.R. Knight
4. Audrey Astori
5. Reuben Samson
6. Zhen-Yuan Lin
7. Dae-Kyum Kim
8. Jennifer J. Knapp
9. Jonathan St-Germain
10. Christopher D. Go
11. Brett Larsen
12. Cassandra J. Wong
13. Patricia Cassonnet
14. Caroline Demeret
15. Yves Jacob
16. Frederick P. Roth
17. Brian Raught
18. Anne-Claude Gingras
Reviewed by ScreenIT

This article has 1 evaluationAppears in 1 listLatest version Sep 4, 2020Latest activity Sep 9, 2020

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