Plant Biology

  1. Specific light-regime adaptations, terpenoid profiles and engineering potential in ecologically diverse Phaeodactylum tricornutum strains

    1. Luca Morelli
    2. Payal Patwari
    3. Florian Pruckner
    4. Maxime Bastide
    5. Michele Fabris

    Reviewed by Arcadia Science

    1 evaluationAppears in 1 listLatest version Latest activity

  2. ATG6 interacting with NPR1 increases Arabidopsis thaliana resistance to Pst DC3000/avrRps4 by increasing its nuclear accumulation and stability

    1. Baihong Zhang
    2. Shuqin Huang
    3. Shuyu Guo
    4. Yixuan Meng
    5. Yuzhen Tian
    6. Yue Zhou
    7. Hang Chen
    8. Xue Li
    9. Jun Zhou
    10. Wenli Chen

    • Curated by eLife

      eLife Assessment

      This important study investigates the role of ATG6 in regulating NPR1, a key protein in the plant immune response. The authors present compelling evidence that ATG6 not only interacts with NPR1 in both the cytoplasm and nucleus but also enhances its stability and nuclear accumulation, leading to increased resistance to Pst DC3000/avrRps4 infection in Arabidopsis thaliana. The work incorporates a variety of approaches from molecular biology, confocal imaging, and biochemistry, which together strengthen the conclusions.

    Reviewed by eLife

    15 evaluationsAppears in 1 listLatest version Latest activity

  3. Polyploid genome assembly of Cardamine chenopodiifolia

    1. Aurélia Emonet
    2. Mohamed Awad
    3. Nikita Tikhomirov
    4. Maria Vasilarou
    5. Miguel Pérez-Antón
    6. Xiangchao Gan
    7. Polina Yu. Novikova
    8. Angela Hay

    • Curated by GigaByte

      This evaluation refers to version 1 of the preprint

      This work presents the genome of Cardamine chenopodiifolia, an amphicarpic plant (developing two fruit types, one above and another below ground) in the mustard (Brassicaceae) family. Cardamines also known as bittercresses and toothworts. As an octoploid species it has been challenging to create a genome reference for this species, and in this case the authors finally managed to achieve this using PacBio HiFi long-reads and Omni-C technology to assemble a fully phased, chromosome-level genome. Obtaining a 597Mb genome assembled into 32 phased chromosomes (plus mitochondrial and plastid genomes), and only having one gap in the centromeric region of chromosome 9. Peer review asked for additional QC and benchmarking, helping demonstrate the genome quality was very high, with only one gap and a N50 of 18.80Mb. The data presented here potentially helping to develop this species as an emerging model organism in the Brassicaceae for studying the development and evolution of amphicarpy by allopolyploidy.

      This evaluation refers to version 1 of the preprint

    Reviewed by GigaByte

    2 evaluationsAppears in 1 listLatest version Latest activity

  4. Virtual staining from bright-field microscopy for label-free quantitative analysis of plant cell structures

    1. Manami Ichita
    2. Haruna Yamamichi
    3. Takumi Higaki

    Reviewed by Arcadia Science

    5 evaluationsAppears in 1 listLatest version Latest activity

  5. A florigen-expressing subpopulation of companion cells expresses other small proteins and reveals a nitrogen-sensitive FT repressor

    1. Hiroshi Takagi
    2. Shogo Ito
    3. Jae Sung Shim
    4. Akane Kubota
    5. Andrew K Hempton
    6. Nayoung Lee
    7. Takamasa Suzuki
    8. Chansie Yang
    9. Christine T Nolan
    10. Kerry L Bubb
    11. Cristina M Alexandre
    12. Daisuke Kurihara
    13. Yoshikatsu Sato
    14. Yasuomi Tada
    15. Takatoshi Kiba
    16. Jose L Pruneda-Paz
    17. Christine Queitsch
    18. Josh T Cuperus
    19. Takato Imaizumi

    • Curated by eLife

      eLife Assessment

      The authors demonstrated cellular heterogeneity of companion cells (CCs) and also suggested the CC subpopulation that highly expressed the florigen gene FT. Based on this finding, they further identified flowering time regulators acting in CCs, including small proteins and NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR1 type proteins (NIGT1s). In particular, the authors propose the NIGT1-FT regulatory module, which may be involved in the response to nitrogen status. This important study advances our understanding of flowering time control at high spatial resolution. While we believe this work will be of broad interest to plant biologists, the supporting evidence remains in parts incomplete. In particular, the quality of the single-cell and bulk RNA-seq data needs to be addressed to solidify the conclusions.

    Reviewed by eLife

    4 evaluationsAppears in 1 listLatest version Latest activity

  6. Plant plasmodesmata bridges form through ER-dependent incomplete cytokinesis

    1. Ziqiang P. Li
    2. Hortense Moreau
    3. Jules D. Petit
    4. Tatiana S. Moraes
    5. Marija Smokvarska
    6. Jessica Pérez-Sancho
    7. Melina Petrel
    8. Fanny Decoeur
    9. Lysiane Brocard
    10. Clément Chambaud
    11. Magali S. Grison
    12. Andrea Paterlini
    13. Marie Glavier
    14. Lucie Hoornaert
    15. Amit S. Joshi
    16. Etienne Gontier
    17. William A. Prinz
    18. Yvon Jaillais
    19. Antoine Taly
    20. Felix Campelo
    21. Marie-Cécile Caillaud
    22. Emmanuelle M. Bayer

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Directional Cell-to-cell Transport in Plant Roots

    1. Léa Jacquier
    2. Celeste Fiorenza
    3. Kevin Robe
    4. Jian-Pu Han
    5. Fabienne Cléard
    6. Christelle Fuchs
    7. Priya Ramakrishna
    8. Sylvain Loubéry
    9. Linnka Lefebvre-Legendre
    10. Marie Barberon

    Reviewed by PREreview

    1 evaluationAppears in 1 listLatest version Latest activity

  8. New evidence for the presence and function of phosphoinositides (PPIs) in the chloroplast

    1. Mastoureh Sedaghatmehr
    2. Frieda Rößler
    3. Alexander P. Hertle

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  9. A wheat tandem kinase sensor activates an NLR helper to trigger immunity

    1. Renjie Chen
    2. Jian Chen
    3. Megan A. Outram
    4. Oliver R. Powell
    5. Taj Arndell
    6. Karthick Gajendiran
    7. Yan L. Wang
    8. Michael A. Ayliffe
    9. Cheryl Blundell
    10. Melania Figueroa
    11. Jana Sperschneider
    12. Thomas Vanhercke
    13. Dingzhong Tang
    14. Yang Xu
    15. Guitao Zhong
    16. Catherine Gardener
    17. Guotai Yu
    18. Spyridon Gourdoupis
    19. Łukasz Jaremko
    20. Oadi Matny
    21. Brian J. Steffenson
    22. Willem H. P. Boshoff
    23. Wilku B. Meyer
    24. Stefan T. Arold
    25. Peter N. Dodds
    26. Brande B. H. Wulff

    Reviewed by PREreview

    1 evaluationAppears in 1 listLatest version Latest activity

  10. A wheat tandem kinase and NLR pair confers resistance to multiple fungal pathogens

    1. Ping Lu
    2. Gaohua Zhang
    3. Jing Li
    4. Zhen Gong
    5. Gaojie Wang
    6. Lingli Dong
    7. Huaizhi Zhang
    8. Guanghao Guo
    9. Min Su
    10. Ke Wang
    11. Yueming Wang
    12. Keyu Zhu
    13. Qiuhong Wu
    14. Yongxing Chen
    15. Miaomiao Li
    16. Baoge Huang
    17. Beibei Li
    18. Wenling Li
    19. Lei Dong
    20. Yikun Hou
    21. Xuejia Cui
    22. Hongkui Fu
    23. Dan Qiu
    24. Chengguo Yuan
    25. Hongjie Li
    26. Jian-Min Zhou
    27. Guan-Zhu Han
    28. Yuhang Chen
    29. Zhiyong Liu

    Reviewed by PREreview

    1 evaluationAppears in 1 listLatest version Latest activity
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