Plant Biology

The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation

1. Yin Hoon Chew
2. Daniel D Seaton
3. Virginie Mengin
4. Anna Flis
5. Sam T Mugford
6. Gavin M George
7. Michael Moulin
8. Alastair Hume
9. Samuel C Zeeman
10. Teresa B Fitzpatrick
11. Alison M Smith
12. Mark Stitt
13. Andrew J Millar

Reviewed by ScreenIT

Locally adaptive temperature response of vegetative growth in Arabidopsis thaliana

1. Pieter Clauw
2. Envel Kerdaffrec
3. Joanna Gunis
4. Ilka Reichardt-Gomez
5. Viktoria Nizhynska
6. Stefanie Koemeda
7. Jakub Jez
8. Magnus Nordborg

• Curated by eLife

  Evaluation Summary:

  This work investigates natural variation in plant growth plasticity in Arabidopsis thaliana. Notably, the paper shows that plants from cold regions show less growth response to temperature than plants from warmer regions and this variation in response is consistent with local adaptation. These results have clear relevance for those specialized in working on A. thaliana life history.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 agreed to share their name with the authors.)

Reviewed by eLife

The genome of Tripterygium wilfordii and characterization of the celastrol biosynthesis pathway

1. Tianlin Pei
2. Mengxiao Yan
3. Yu Kong
4. Hang Fan
5. Jie Liu
6. Mengying Cui
7. Yumin Fang
8. Binjie Ge
9. Jun Yang
10. Qing Zhao

Reviewed by GigaByte

LED light gradient as a screening tool for light quality responses in model plant species

1. P. Lejeune
2. A. Fratamico
3. F. Bouché
4. S. Huerga Fernández
5. P. Tocquin
6. C. Périlleux

Reviewed by GigaScience

Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.)

1. Gareth Linsmith
2. Stephane Rombauts
3. Sara Montanari
4. Cecilia H Deng
5. Jean-Marc Celton
6. Philippe Guérif
7. Chang Liu
8. Rolf Lohaus
9. Jason D Zurn
10. Alessandro Cestaro
11. Nahla V Bassil
12. Linda V Bakker
13. Elio Schijlen
14. Susan E Gardiner
15. Yves Lespinasse
16. Charles-Eric Durel
17. Riccardo Velasco
18. David B Neale
19. David Chagné
20. Yves Van de Peer
21. Michela Troggio
22. Luca Bianco

Reviewed by GigaScience

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies

1. Jonathan A. Atkinson
2. Guillaume Lobet
3. Manuel Noll
4. Patrick E. Meyer
5. Marcus Griffiths
6. Darren M. Wells

Reviewed by GigaScience

Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade

1. Daniel H. Chitwood
2. Wagner C. Otoni

Reviewed by GigaScience

ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

1. Nicolás Gaggion
2. Federico Ariel
3. Vladimir Daric
4. Éric Lambert
5. Simon Legendre
6. Thomas Roulé
7. Alejandra Camoirano
8. Diego H. Milone
9. Martin Crespi
10. Thomas Blein
11. Enzo Ferrante

Reviewed by GigaScience

Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

1. Mitchell J Feldmann
2. Michael A Hardigan
3. Randi A Famula
4. Cindy M López
5. Amy Tabb
6. Glenn S Cole
7. Steven J Knapp

Reviewed by GigaScience

CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

1. Daniel Reynolds
2. Joshua Ball
3. Alan Bauer
4. Robert Davey
5. Simon Griffiths
6. Ji Zhou

Reviewed by GigaScience