Genomics

  1. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

    1. Hui-Su Kim
    2. Sungwon Jeon
    3. Changjae Kim
    4. Yeon Kyung Kim
    5. Yun Sung Cho
    6. Jungeun Kim
    7. Asta Blazyte
    8. Andrea Manica
    9. Semin Lee
    10. Jong Bhak

    Reviewed by GigaScience

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  2. Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

    1. Bo Song
    2. Yue Song
    3. Yuan Fu
    4. Elizabeth Balyejusa Kizito
    5. Sandra Ndagire Kamenya
    6. Pamela Nahamya Kabod
    7. Huan Liu
    8. Samuel Muthemba
    9. Robert Kariba
    10. Joyce Njuguna
    11. Solomon Maina
    12. Francesca Stomeo
    13. Appolinaire Djikeng
    14. Prasad S Hendre
    15. Xiaoli Chen
    16. Wenbin Chen
    17. Xiuli Li
    18. Wenjing Sun
    19. Sibo Wang
    20. Shifeng Cheng
    21. Alice Muchugi
    22. Ramni Jamnadass
    23. Howard-Yana Shapiro
    24. Allen Van Deynze
    25. Huanming Yang
    26. Jian Wang
    27. Xun Xu
    28. Damaris Achieng Odeny
    29. Xin Liu

    Reviewed by GigaScience

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  3. A chromosome-level genome assembly for the eastern fence lizard ( Sceloporus undulatus ), a reptile model for physiological and evolutionary ecology

    1. Aundrea K Westfall
    2. Rory S Telemeco
    3. Mariana B Grizante
    4. Damien S Waits
    5. Amanda D Clark
    6. Dasia Y Simpson
    7. Randy L Klabacka
    8. Alexis P Sullivan
    9. George H Perry
    10. Michael W Sears
    11. Christian L Cox
    12. Robert M Cox
    13. Matthew E Gifford
    14. Henry B John-Alder
    15. Tracy Langkilde
    16. Michael J Angilletta
    17. Adam D Leaché
    18. Marc Tollis
    19. Kenro Kusumi
    20. Tonia S Schwartz

    Reviewed by GigaScience

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  4. Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines

    1. Mikhail G Dozmorov
    2. Katarzyna M Tyc
    3. Nathan C Sheffield
    4. David C Boyd
    5. Amy L Olex
    6. Jason Reed
    7. J Chuck Harrell

    Reviewed by GigaScience

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  5. Synonymous variants that disrupt messenger RNA structure are significantly constrained in the human population

    1. Jeffrey B S Gaither
    2. Grant E Lammi
    3. James L Li
    4. David M Gordon
    5. Harkness C Kuck
    6. Benjamin J Kelly
    7. James R Fitch
    8. Peter White

    Reviewed by GigaScience

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  6. A chromosome-level genome assembly for the Pacific oyster ( Crassostrea gigas )

    1. Carolina Peñaloza
    2. Alejandro P. Gutierrez
    3. Lel Eory
    4. Shan Wang
    5. Ximing Guo
    6. Alan L. Archibald
    7. Tim P. Bean
    8. Ross D. Houston

    Reviewed by GigaScience

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  7. Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis

    1. Anton Zamyatin
    2. Pavel Avdeyev
    3. Jiangtao Liang
    4. Atashi Sharma
    5. Chujia Chen
    6. Varvara Lukyanchikova
    7. Nikita Alexeev
    8. Zhijian Tu
    9. Max A. Alekseyev
    10. Igor V. Sharakhov

    Reviewed by GigaScience

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  8. The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

    1. Holly C Beale
    2. Jacquelyn M Roger
    3. Matthew A Cattle
    4. Liam T McKay
    5. Drew K A Thompson
    6. Katrina Learned
    7. A Geoffrey Lyle
    8. Ellen T Kephart
    9. Rob Currie
    10. Du Linh Lam
    11. Lauren Sanders
    12. Jacob Pfeil
    13. John Vivian
    14. Isabel Bjork
    15. Sofie R Salama
    16. David Haussler
    17. Olena M Vaske

    Reviewed by GigaScience

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  9. Genome Diversity in Ukraine

    1. Taras K. Oleksyk
    2. Walter W. Wolfsberger
    3. Alexandra Weber
    4. Khrystyna Shchubelka
    5. Olga T. Oleksyk
    6. Olga Levchuk
    7. Alla Patrus
    8. Nelya Lazar
    9. Stephanie O. Castro-Marquez
    10. Patricia Boldyzhar
    11. Alina Urbanovych
    12. Viktoriya Stakhovska
    13. Kateryna Malyar
    14. Svitlana Chervyakova
    15. Olena Podoroha
    16. Natalia Kovalchuk
    17. Yaroslava Hasynets
    18. Juan L. Rodriguez-Flores
    19. Sarah Medley
    20. Fabia Battistuzzi
    21. Ryan Liu
    22. Yong Hou
    23. Siru Chen
    24. Huanming Yang
    25. Meredith Yeager
    26. Michael Dean
    27. Ryan E. Mills
    28. Volodymyr Smolanka

    Reviewed by GigaScience

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  10. Long-reads assembly of the Brassica napus reference genome, Darmor-bzh

    1. Mathieu Rousseau-Gueutin
    2. Caroline Belser
    3. Corinne Da Silva
    4. Gautier Richard
    5. Benjamin Istace
    6. Corinne Cruaud
    7. Cyril Falentin
    8. Franz Boideau
    9. Julien Boutte
    10. Regine Delourme
    11. Gwenaëlle Deniot
    12. Stefan Engelen
    13. Julie Ferreira de Carvalho
    14. Arnaud Lemainque
    15. Loeiz Maillet
    16. Jérôme Morice
    17. Patrick Wincker
    18. France Denoeud
    19. Anne-Marie Chèvre
    20. Jean-Marc Aury

    Reviewed by GigaScience

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