Genomics

  1. Improved chromosome level genome assembly of the Glanville fritillary butterfly ( Melitaea cinxia ) based on SMRT Sequencing and linkage map

    1. Daniel Blande
    2. Olli-Pekka Smolander
    3. Virpi Ahola
    4. Pasi Rastas
    5. Jaakko Tanskanen
    6. Juhana I. Kammonen
    7. Vicencio Oostra
    8. Lorenzo Pellegrini
    9. Suvi Ikonen
    10. Tad Dallas
    11. Michelle F. DiLeo
    12. Anne Duplouy
    13. Ilhan Cem Duru
    14. Pauliina Halimaa
    15. Aapo Kahilainen
    16. Suyog S. Kuwar
    17. Sirpa O. Kärenlampi
    18. Elvira Lafuente
    19. Shiqi Luo
    20. Jenny Makkonen
    21. Abhilash Nair
    22. Maria de la Paz Celorio-Mancera
    23. Ville Pennanen
    24. Annukka Ruokolainen
    25. Tarja Sundell
    26. Arja I. Tervahauta
    27. Victoria Twort
    28. Erik van Bergen
    29. Janina Österman-Udd
    30. Lars Paulin
    31. Mikko J. Frilander
    32. Petri Auvinen
    33. Marjo Saastamoinen

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  2. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

    1. Hui-Su Kim
    2. Sungwon Jeon
    3. Changjae Kim
    4. Yeon Kyung Kim
    5. Yun Sung Cho
    6. Jungeun Kim
    7. Asta Blazyte
    8. Andrea Manica
    9. Semin Lee
    10. Jong Bhak

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

    1. Bo Song
    2. Yue Song
    3. Yuan Fu
    4. Elizabeth Balyejusa Kizito
    5. Sandra Ndagire Kamenya
    6. Pamela Nahamya Kabod
    7. Huan Liu
    8. Samuel Muthemba
    9. Robert Kariba
    10. Joyce Njuguna
    11. Solomon Maina
    12. Francesca Stomeo
    13. Appolinaire Djikeng
    14. Prasad S Hendre
    15. Xiaoli Chen
    16. Wenbin Chen
    17. Xiuli Li
    18. Wenjing Sun
    19. Sibo Wang
    20. Shifeng Cheng
    21. Alice Muchugi
    22. Ramni Jamnadass
    23. Howard-Yana Shapiro
    24. Allen Van Deynze
    25. Huanming Yang
    26. Jian Wang
    27. Xun Xu
    28. Damaris Achieng Odeny
    29. Xin Liu

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. A chromosome-level genome assembly for the eastern fence lizard ( Sceloporus undulatus ), a reptile model for physiological and evolutionary ecology

    1. Aundrea K Westfall
    2. Rory S Telemeco
    3. Mariana B Grizante
    4. Damien S Waits
    5. Amanda D Clark
    6. Dasia Y Simpson
    7. Randy L Klabacka
    8. Alexis P Sullivan
    9. George H Perry
    10. Michael W Sears
    11. Christian L Cox
    12. Robert M Cox
    13. Matthew E Gifford
    14. Henry B John-Alder
    15. Tracy Langkilde
    16. Michael J Angilletta
    17. Adam D Leaché
    18. Marc Tollis
    19. Kenro Kusumi
    20. Tonia S Schwartz

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines

    1. Mikhail G Dozmorov
    2. Katarzyna M Tyc
    3. Nathan C Sheffield
    4. David C Boyd
    5. Amy L Olex
    6. Jason Reed
    7. J Chuck Harrell

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Synonymous variants that disrupt messenger RNA structure are significantly constrained in the human population

    1. Jeffrey B S Gaither
    2. Grant E Lammi
    3. James L Li
    4. David M Gordon
    5. Harkness C Kuck
    6. Benjamin J Kelly
    7. James R Fitch
    8. Peter White

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. A chromosome-level genome assembly for the Pacific oyster ( Crassostrea gigas )

    1. Carolina Peñaloza
    2. Alejandro P. Gutierrez
    3. Lel Eory
    4. Shan Wang
    5. Ximing Guo
    6. Alan L. Archibald
    7. Tim P. Bean
    8. Ross D. Houston

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis

    1. Anton Zamyatin
    2. Pavel Avdeyev
    3. Jiangtao Liang
    4. Atashi Sharma
    5. Chujia Chen
    6. Varvara Lukyanchikova
    7. Nikita Alexeev
    8. Zhijian Tu
    9. Max A. Alekseyev
    10. Igor V. Sharakhov

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

    1. Holly C Beale
    2. Jacquelyn M Roger
    3. Matthew A Cattle
    4. Liam T McKay
    5. Drew K A Thompson
    6. Katrina Learned
    7. A Geoffrey Lyle
    8. Ellen T Kephart
    9. Rob Currie
    10. Du Linh Lam
    11. Lauren Sanders
    12. Jacob Pfeil
    13. John Vivian
    14. Isabel Bjork
    15. Sofie R Salama
    16. David Haussler
    17. Olena M Vaske

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Genome Diversity in Ukraine

    1. Taras K. Oleksyk
    2. Walter W. Wolfsberger
    3. Alexandra Weber
    4. Khrystyna Shchubelka
    5. Olga T. Oleksyk
    6. Olga Levchuk
    7. Alla Patrus
    8. Nelya Lazar
    9. Stephanie O. Castro-Marquez
    10. Patricia Boldyzhar
    11. Alina Urbanovych
    12. Viktoriya Stakhovska
    13. Kateryna Malyar
    14. Svitlana Chervyakova
    15. Olena Podoroha
    16. Natalia Kovalchuk
    17. Yaroslava Hasynets
    18. Juan L. Rodriguez-Flores
    19. Sarah Medley
    20. Fabia Battistuzzi
    21. Ryan Liu
    22. Yong Hou
    23. Siru Chen
    24. Huanming Yang
    25. Meredith Yeager
    26. Michael Dean
    27. Ryan E. Mills
    28. Volodymyr Smolanka

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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