Bioinformatics

  1. A recurrence-based approach for validating structural variation using long-read sequencing technology

    1. Xuefang Zhao
    2. Alexandra M. Weber
    3. Ryan E. Mills

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. 16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

    1. Ruibang Luo
    2. Michael C. Schatz
    3. Steven L. Salzberg

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Kronos: a workflow assembler for genome analytics and informatics

    1. M. Jafar Taghiyar
    2. Jamie Rosner
    3. Diljot Grewal
    4. Bruno M. Grande
    5. Radhouane Aniba
    6. Jasleen Grewal
    7. Paul C. Boutros
    8. Ryan D. Morin
    9. Ali Bashashati
    10. Sohrab P. Shah

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines

    1. Baekdoo Kim
    2. Thahmina Ali
    3. Carlos Lijeron
    4. Enis Afgan
    5. Konstantinos Krampis

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. NanoSim: nanopore sequence read simulator based on statistical characterization

    1. Chen Yang
    2. Justin Chu
    3. René L Warren
    4. Inanç Birol

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

    1. Benjamin Istace
    2. Anne Friedrich
    3. Léo d'Agata
    4. Sébastien Faye
    5. Emilie Payen
    6. Odette Beluche
    7. Claudia Caradec
    8. Sabrina Davidas
    9. Corinne Cruaud
    10. Gianni Liti
    11. Arnaud Lemainque
    12. Stefan Engelen
    13. Patrick Wincker
    14. Joseph Schacherer
    15. Jean-Marc Aury

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets

    1. Apurva Narechania
    2. Richard Baker
    3. Rob DeSalle
    4. Barun Mathema
    5. Sergios-Orestis Kolokotronis
    6. Barry Kreiswirth
    7. Paul J Planet

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Streaming algorithms for identification pathogens and antibiotic resistance potential from real-time MinION™ sequencing

    1. Minh Duc Cao
    2. Devika Ganesamoorthy
    3. Alysha G Elliott
    4. Huihui Zhang
    5. Matthew A Cooper
    6. Lachlan J M Coin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

    1. Matthias Lange
    2. Blaise T F Alako
    3. Guy Cochrane
    4. Mehmood Ghaffar
    5. Martin Mascher
    6. Pia-Katharina Habekost
    7. Upneet Hillebrand
    8. Uwe Scholz
    9. Florian Schorch
    10. Jens Freitag
    11. Amber Hartman Scholz

    Reviewed by GigaScience

    4 evaluationsAppears in 1 listLatest version Latest activity

  10. AGOUTI: improving genome assembly and annotation using transcriptome data

    1. Simo V Zhang
    2. Luting Zhuo
    3. Matthew W Hahn

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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