Bioinformatics

  1. Error correcting optical mapping data

    1. Kingshuk Mukherjee
    2. Darshan Washimkar
    3. Martin D Muggli
    4. Leena Salmela
    5. Christina Boucher

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

    1. Swati Parekh
    2. Christoph Ziegenhain
    3. Beate Vieth
    4. Wolfgang Enard
    5. Ines Hellmann

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

    1. Jonathan R Belyeu
    2. Thomas J Nicholas
    3. Brent S Pedersen
    4. Thomas A Sasani
    5. James M Havrilla
    6. Stephanie N Kravitz
    7. Megan E Conway
    8. Brian K Lohman
    9. Aaron R Quinlan
    10. Ryan M Layer

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Improving the annotation of the Heterorhabditis bacteriophora genome

    1. Florence McLean
    2. Duncan Berger
    3. Dominik R Laetsch
    4. Hillel T Schwartz
    5. Mark Blaxter

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  5. Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

    1. Haotian Teng
    2. Minh Duc Cao
    3. Michael B Hall
    4. Tania Duarte
    5. Sheng Wang
    6. Lachlan J M Coin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors

    1. Tomáš Lukeš
    2. Jakub Pospíšil
    3. Karel Fliegel
    4. Theo Lasser
    5. Guy M Hagen

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Construction of the third-generation Zea mays haplotype map

    1. Robert Bukowski
    2. Xiaosen Guo
    3. Yanli Lu
    4. Cheng Zou
    5. Bing He
    6. Zhengqin Rong
    7. Bo Wang
    8. Dawen Xu
    9. Bicheng Yang
    10. Chuanxiao Xie
    11. Longjiang Fan
    12. Shibin Gao
    13. Xun Xu
    14. Gengyun Zhang
    15. Yingrui Li
    16. Yinping Jiao
    17. John F Doebley
    18. Jeffrey Ross-Ibarra
    19. Anne Lorant
    20. Vince Buffalo
    21. M Cinta Romay
    22. Edward S Buckler
    23. Doreen Ware
    24. Jinsheng Lai
    25. Qi Sun
    26. Yunbi Xu

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle

    1. Valerie De Anda
    2. Icoquih Zapata-Peñasco
    3. Augusto Cesar Poot-Hernandez
    4. Luis E Eguiarte
    5. Bruno Contreras-Moreira
    6. Valeria Souza

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Deep machine learning provides state-of-the-art performance in image-based plant phenotyping

    1. Michael P. Pound
    2. Jonathan A. Atkinson
    3. Alexandra J. Townsend
    4. Michael H. Wilson
    5. Marcus Griffiths
    6. Aaron S. Jackson
    7. Adrian Bulat
    8. Georgios Tzimiropoulos
    9. Darren M. Wells
    10. Erik H. Murchie
    11. Tony P. Pridmore
    12. Andrew P. French

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D

    1. Vaja Liluashvili
    2. Selim Kalayci
    3. Eugene Fluder
    4. Manda Wilson
    5. Aaron Gabow
    6. Zeynep H. Gümüş

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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