Bioinformatics

  1. Clustering trees: a visualization for evaluating clusterings at multiple resolutions

    1. Luke Zappia
    2. Alicia Oshlack

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Leveraging multiple transcriptome assembly methods for improved gene structure annotation

    1. Luca Venturini
    2. Shabhonam Caim
    3. Gemy George Kaithakottil
    4. Daniel Lee Mapleson
    5. David Swarbreck

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Hot-starting software containers for STAR aligner

    1. Pai Zhang
    2. Ling-Hong Hung
    3. Wes Lloyd
    4. Ka Yee Yeung

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. AMBER: Assessment of Metagenome BinnERs

    1. Fernando Meyer
    2. Peter Hofmann
    3. Peter Belmann
    4. Ruben Garrido-Oter
    5. Adrian Fritz
    6. Alexander Sczyrba
    7. Alice C McHardy

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

    1. L M Simon
    2. S Karg
    3. A J Westermann
    4. M Engel
    5. A H A Elbehery
    6. B Hense
    7. M Heinig
    8. L Deng
    9. F J Theis

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. YAMP: a containerized workflow enabling reproducibility in metagenomics research

    1. Alessia Visconti
    2. Tiphaine C Martin
    3. Mario Falchi

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Experimenting with reproducibility: a case study of robustness in bioinformatics

    1. Yang-Min Kim
    2. Jean-Baptiste Poline
    3. Guillaume Dumas

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

    1. Nadia M Davidson
    2. Alicia Oshlack

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Fast-SG: an alignment-free algorithm for hybrid assembly

    1. Alex Di Genova
    2. Gonzalo A Ruz
    3. Marie-France Sagot
    4. Alejandro Maass

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. ASaiM: a Galaxy-based framework to analyze microbiota data

    1. Bérénice Batut
    2. Kévin Gravouil
    3. Clémence Defois
    4. Saskia Hiltemann
    5. Jean-François Brugère
    6. Eric Peyretaillade
    7. Pierre Peyret

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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