Bioinformatics

  1. YAMP: a containerized workflow enabling reproducibility in metagenomics research

    1. Alessia Visconti
    2. Tiphaine C Martin
    3. Mario Falchi

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Experimenting with reproducibility in bioinformatics

    1. Yang-Min Kim
    2. Jean-Baptiste Poline
    3. Guillaume Dumas

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

    1. Nadia M Davidson
    2. Alicia Oshlack

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Fast-SG: an alignment-free algorithm for hybrid assembly

    1. Alex Di Genova
    2. Gonzalo A Ruz
    3. Marie-France Sagot
    4. Alejandro Maass

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. ASaiM: a Galaxy-based framework to analyze raw shotgun data from microbiota

    1. Bérénice Batut
    2. Kévin Gravouil
    3. Clémence Defois
    4. Saskia Hiltemann
    5. Jean-François Brugère
    6. Eric Peyretaillade
    7. Pierre Peyret

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Error correcting optical mapping data

    1. Kingshuk Mukherjee
    2. Darshan Washimkar
    3. Martin D Muggli
    4. Leena Salmela
    5. Christina Boucher

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

    1. Swati Parekh
    2. Christoph Ziegenhain
    3. Beate Vieth
    4. Wolfgang Enard
    5. Ines Hellmann

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

    1. Jonathan R Belyeu
    2. Thomas J Nicholas
    3. Brent S Pedersen
    4. Thomas A Sasani
    5. James M Havrilla
    6. Stephanie N Kravitz
    7. Megan E Conway
    8. Brian K Lohman
    9. Aaron R Quinlan
    10. Ryan M Layer

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Improving the annotation of the Heterorhabditis bacteriophora genome

    1. Florence McLean
    2. Duncan Berger
    3. Dominik R Laetsch
    4. Hillel T Schwartz
    5. Mark Blaxter

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  10. Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning

    1. Haotian Teng
    2. Minh Duc Cao
    3. Michael B. Hall
    4. Tania Duarte
    5. Sheng Wang
    6. Lachlan J.M. Coin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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