1. Correcting for experiment-specific variability in expression compendia can remove underlying signals

    This article has 5 authors:
    1. Alexandra J Lee
    2. YoSon Park
    3. Georgia Doing
    4. Deborah A Hogan
    5. Casey S Greene

    Reviewed by GigaScience

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  2. A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

    This article has 23 authors:
    1. Mehmet Tekman
    2. Bérénice Batut
    3. Alexander Ostrovsky
    4. Christophe Antoniewski
    5. Dave Clements
    6. Fidel Ramirez
    7. Graham J Etherington
    8. Hans-Rudolf Hotz
    9. Jelle Scholtalbers
    10. Jonathan R Manning
    11. Lea Bellenger
    12. Maria A Doyle
    13. Mohammad Heydarian
    14. Ni Huang
    15. Nicola Soranzo
    16. Pablo Moreno
    17. Stefan Mautner
    18. Irene Papatheodorou
    19. Anton Nekrutenko
    20. James Taylor
    21. Daniel Blankenberg
    22. Rolf Backofen
    23. Björn Grüning

    Reviewed by GigaScience

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  3. A map of tumor–host interactions in glioma at single-cell resolution

    This article has 16 authors:
    1. Francesca Pia Caruso
    2. Luciano Garofano
    3. Fulvio D'Angelo
    4. Kai Yu
    5. Fuchou Tang
    6. Jinzhou Yuan
    7. Jing Zhang
    8. Luigi Cerulo
    9. Stefano M Pagnotta
    10. Davide Bedognetti
    11. Peter A Sims
    12. Mario Suvà
    13. Xiao-Dong Su
    14. Anna Lasorella
    15. Antonio Iavarone
    16. Michele Ceccarelli

    Reviewed by GigaScience

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  4. Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

    This article has 5 authors:
    1. Xiang Zhou
    2. Hua Chai
    3. Huiying Zhao
    4. Ching-Hsing Luo
    5. Yuedong Yang

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  5. Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

    This article has 4 authors:
    1. Kirill Kryukov
    2. Mahoko Takahashi Ueda
    3. So Nakagawa
    4. Tadashi Imanishi

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  6. CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

    This article has 5 authors:
    1. Victor A Padilha
    2. Omer S Alkhnbashi
    3. Shiraz A Shah
    4. André C P L F de Carvalho
    5. Rolf Backofen

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  7. Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

    This article has 6 authors:
    1. Saber Hafezqorani
    2. Chen Yang
    3. Theodora Lo
    4. Ka Ming Nip
    5. René L Warren
    6. Inanc Birol

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  8. SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat

    This article has 10 authors:
    1. Wenxi Wang
    2. Zihao Wang
    3. Xintong Li
    4. Zhongfu Ni
    5. Zhaorong Hu
    6. Mingming Xin
    7. Huiru Peng
    8. Yingyin Yao
    9. Qixin Sun
    10. Weilong Guo

    Reviewed by GigaScience

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  9. parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

    This article has 11 authors:
    1. Alessandro Petrini
    2. Marco Mesiti
    3. Max Schubach
    4. Marco Frasca
    5. Daniel Danis
    6. Matteo Re
    7. Giuliano Grossi
    8. Luca Cappelletti
    9. Tiziana Castrignanò
    10. Peter N Robinson
    11. Giorgio Valentini

    Reviewed by GigaScience

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  10. Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

    This article has 4 authors:
    1. Morteza Hosseini
    2. Diogo Pratas
    3. Burkhard Morgenstern
    4. Armando J Pinho

    Reviewed by GigaScience

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