1. CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing

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    2. Arijit Panda
    3. Colin Diesh
    4. Ian Holmes
    5. Alexej Abyzov

    Reviewed by GigaScience

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  2. Building the mega single-cell transcriptome ocular meta-atlas

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    2. Temesgen D Fufa
    3. Robert B Hufnagel
    4. David M McGaughey

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  3. BiSulfite Bolt: A bisulfite sequencing analysis platform

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  4. Fluorescence microscopy datasets for training deep neural networks

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    2. Justin Bendesky
    3. Rosa Machado
    4. Tram-Anh Nguyen
    5. Tanmay Kumar
    6. Jonathan Ventura

    Reviewed by GigaScience

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  5. Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit

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    3. Martin Dahlö
    4. Håkan Wieslander
    5. Philip J Harrison
    6. Ida-Maria Sintorn
    7. Alan Sabirsh
    8. Carolina Wählby
    9. Ola Spjuth
    10. Andreas Hellander

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  6. HTSlib: C library for reading/writing high-throughput sequencing data

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    2. John Marshall
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    8. Robert M Davies

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  7. MB-GAN: Microbiome Simulation via Generative Adversarial Network

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    2. Shuang Jiang
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    4. Guanghua Xiao
    5. Yang Xie
    6. Dajiang J Liu
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    8. Xiaowei Zhan

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  8. Lilikoi V2.0: a deep learning–enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data

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  9. Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses

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    2. Amadou Barry
    3. Erin W Dickie
    4. Shawn T Brown
    5. Gabriel A Devenyi
    6. Koji Hatano
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    8. Alain Dagher
    9. Mallar Chakravarty
    10. Celia M T Greenwood
    11. Bratislav Misic
    12. David N Kennedy
    13. Jean-Baptiste Poline

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  10. Streamlining data-intensive biology with workflow systems

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    2. Phillip T Brooks†
    3. Luiz Irber†
    4. Shannon E K Joslin†
    5. Charles M Reid†
    6. Camille Scott†
    7. C Titus Brown
    8. N Tessa Pierce-Ward

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