Bioinformatics

  1. CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

    1. Victor A Padilha
    2. Omer S Alkhnbashi
    3. Shiraz A Shah
    4. André C P L F de Carvalho
    5. Rolf Backofen

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

    1. Saber Hafezqorani
    2. Chen Yang
    3. Theodora Lo
    4. Ka Ming Nip
    5. René L Warren
    6. Inanc Birol

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat

    1. Wenxi Wang
    2. Zihao Wang
    3. Xintong Li
    4. Zhongfu Ni
    5. Zhaorong Hu
    6. Mingming Xin
    7. Huiru Peng
    8. Yingyin Yao
    9. Qixin Sun
    10. Weilong Guo

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

    1. Alessandro Petrini
    2. Marco Mesiti
    3. Max Schubach
    4. Marco Frasca
    5. Daniel Danis
    6. Matteo Re
    7. Giuliano Grossi
    8. Luca Cappelletti
    9. Tiziana Castrignanò
    10. Peter N Robinson
    11. Giorgio Valentini

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

    1. Morteza Hosseini
    2. Diogo Pratas
    3. Burkhard Morgenstern
    4. Armando J Pinho

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

    1. Katarzyna Murat
    2. Björn Grüning
    3. Paulina Wiktoria Poterlowicz
    4. Gillian Westgate
    5. Desmond J Tobin
    6. Krzysztof Poterlowicz

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Community standards for open cell migration data

    1. Alejandra N Gonzalez-Beltran
    2. Paola Masuzzo
    3. Christophe Ampe
    4. Gert-Jan Bakker
    5. Sébastien Besson
    6. Robert H Eibl
    7. Peter Friedl
    8. Matthias Gunzer
    9. Mark Kittisopikul
    10. Sylvia E Le Dévédec
    11. Simone Leo
    12. Josh Moore
    13. Yael Paran
    14. Jaime Prilusky
    15. Philippe Rocca-Serra
    16. Philippe Roudot
    17. Marc Schuster
    18. Gwendolien Sergeant
    19. Staffan Strömblad
    20. Jason R Swedlow
    21. Merijn van Erp
    22. Marleen Van Troys
    23. Assaf Zaritsky
    24. Susanna-Assunta Sansone
    25. Lennart Martens

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  8. Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

    1. Rafael R C Cuadrat
    2. Maria Sorokina
    3. Bruno G Andrade
    4. Tobias Goris
    5. Alberto M R Dávila

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

    1. Marco Antonio Tangaro
    2. Giacinto Donvito
    3. Marica Antonacci
    4. Matteo Chiara
    5. Pietro Mandreoli
    6. Graziano Pesole
    7. Federico Zambelli

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

    1. Stephen R Piccolo
    2. Terry J Lee
    3. Erica Suh
    4. Kimball Hill

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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