Bioinformatics

  1. Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework

    1. Matthias Fahrner
    2. Melanie Christine Föll
    3. Björn Andreas Grüning
    4. Matthias Bernt
    5. Hannes Röst
    6. Oliver Schilling

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  2. Comparative analysis of common alignment tools for single-cell RNA sequencing

    1. Ralf Schulze Brüning
    2. Lukas Tombor
    3. Marcel H Schulz
    4. Stefanie Dimmeler
    5. David John

    Reviewed by GigaScience

    3 evaluationsAppears in 1 listLatest version Latest activity

  3. MBGC: Multiple Bacteria Genome Compressor

    1. Szymon Grabowski
    2. Tomasz M Kowalski

    Reviewed by GigaScience

    3 evaluationsAppears in 1 listLatest version Latest activity

  4. ExTaxsI: an exploration tool of biodiversity molecular data

    1. Giulia Agostinetto
    2. Alberto Brusati
    3. Anna Sandionigi
    4. Adam Chahed
    5. Elena Parladori
    6. Bachir Balech
    7. Antonia Bruno
    8. Dario Pescini
    9. Maurizio Casiraghi

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  5. Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

    1. Youri Hoogstrate
    2. Malgorzata A. Komor
    3. René Böttcher
    4. Job van Riet
    5. Harmen J. G. van de Werken
    6. Stef van Lieshout
    7. Ralf Hoffmann
    8. Evert van den Broek
    9. Anne S. Bolijn
    10. Natasja Dits
    11. Daoud Sie
    12. David van der Meer
    13. Floor Pepers
    14. Chris H. Bangma
    15. Geert J. L. H. van Leenders
    16. Marcel Smid
    17. Pim French
    18. John W.M. Martens
    19. Wilbert van Workum
    20. Peter J. van der Spek
    21. Bart Janssen
    22. Eric Caldenhoven
    23. Christian Rausch
    24. Mark de Jong
    25. Andrew P. Stubbs
    26. Gerrit A. Meijer
    27. Remond J.A. Fijneman
    28. Guido Jenster

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

    1. Nathan C Sheffield
    2. Michał Stolarczyk
    3. Vincent P Reuter
    4. André F Rendeiro

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)

    1. Muhammad Zohaib Anwar
    2. Anders Lanzen
    3. Toke Bang-Andreasen
    4. Carsten Suhr Jacobsen

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

    1. Luis Francisco Hernández Sánchez
    2. Bram Burger
    3. Carlos Horro
    4. Antonio Fabregat
    5. Stefan Johansson
    6. Pål Rasmus Njølstad
    7. Harald Barsnes
    8. Henning Hermjakob
    9. Marc Vaudel

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. A Galaxy-based training resource for single-cell RNA-seq quality control and analyses

    1. Graham J Etherington
    2. Nicola Soranzo
    3. Suhaib Mohammed
    4. Wilfried Haerty
    5. Robert P Davey
    6. Federica Di Palma

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Arteria: An automation system for a sequencing core facility

    1. Johan Dahlberg
    2. Johan Hermansson
    3. Steinar Sturlaugsson
    4. Mariya Lysenkova
    5. Patrik Smeds
    6. Claes Ladenvall
    7. Roman Valls Guimera
    8. Florian Reisinger
    9. Oliver Hofmann
    10. Pontus Larsson

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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