1. rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

    This article has 4 authors:
    1. Elena Bushmanova
    2. Dmitry Antipov
    3. Alla Lapidus
    4. Andrey D Prjibelski

    Reviewed by GigaScience

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  2. rCASC: reproducible classification analysis of single-cell sequencing data

    This article has 11 authors:
    1. Luca Alessandrì
    2. Francesca Cordero
    3. Marco Beccuti
    4. Maddalena Arigoni
    5. Martina Olivero
    6. Greta Romano
    7. Sergio Rabellino
    8. Nicola Licheri
    9. Gennaro De Libero
    10. Luigia Pace
    11. Raffaele A Calogero

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  3. Evaluating stably expressed genes in single cells

    This article has 9 authors:
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    2. Shila Ghazanfar
    3. Dario Strbenac
    4. Andy Wang
    5. Ellis Patrick
    6. David M Lin
    7. Terence Speed
    8. Jean Y H Yang
    9. Pengyi Yang

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  4. A field guide for the compositional analysis of any-omics data

    This article has 6 authors:
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    2. Ionas Erb
    3. Greg Gloor
    4. Cedric Notredame
    5. Mark F Richardson
    6. Tamsyn M Crowley

    Reviewed by GigaScience

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  5. SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

    This article has 4 authors:
    1. Marek Wiewiórka
    2. Agnieszka Szmurło
    3. Wiktor Kuśmirek
    4. Tomasz Gambin

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  6. Machado: open source genomics data integration framework

    This article has 2 authors:
    1. Mauricio de Alvarenga Mudadu
    2. Adhemar Zerlotini

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  7. VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock

    This article has 4 authors:
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    2. John Heap
    3. Andrew R Jones
    4. Andrew P Jackson

    Reviewed by GigaScience

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  8. Parallel sequencing lives, or what makes large sequencing projects successful

    This article has 10 authors:
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    2. Enrique Vidal
    3. François Le Dily
    4. François Serra
    5. Yasmina Cuartero
    6. Ralph Stadhouders
    7. Thomas Graf
    8. Marc A. Marti-Renom
    9. Miguel Beato
    10. Guillaume Filion

    Reviewed by GigaScience

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  9. CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing

    This article has 5 authors:
    1. Milovan Suvakov
    2. Arijit Panda
    3. Colin Diesh
    4. Ian Holmes
    5. Alexej Abyzov

    Reviewed by GigaScience

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  10. Building the Mega Single Cell Transcriptome Ocular Meta-Atlas

    This article has 4 authors:
    1. Vinay S Swamy
    2. Temesgen D Fufa
    3. Robert B Hufnagel
    4. David M McGaughey

    Reviewed by GigaScience

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