Bioinformatics

  1. TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors

    1. Markus Hoffmann
    2. Nico Trummer
    3. Leon Schwartz
    4. Jakub Jankowski
    5. Hye Kyung Lee
    6. Lina-Liv Willruth
    7. Olga Lazareva
    8. Kevin Yuan
    9. Nina Baumgarten
    10. Florian Schmidt
    11. Jan Baumbach
    12. Marcel H Schulz
    13. David B Blumenthal
    14. Lothar Hennighausen
    15. Markus List

    Reviewed by GigaScience

    3 evaluationsAppears in 1 listLatest version Latest activity

  2. zDB: bacterial comparative genomics made easy

    1. Bastian Marquis
    2. Trestan Pillonel
    3. Alessia Carrara
    4. Claire Bertelli

    Reviewed by Arcadia Science

    1 evaluationAppears in 1 listLatest version Latest activity

  3. ESMFold Hallucinates Native-Like Protein Sequences

    1. Jeliazko R. Jeliazkov
    2. Diego del Alamo
    3. Joel D. Karpiak

    Reviewed by Arcadia Science

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Toward universal cell embeddings: integrating single-cell RNA-seq datasets across species with SATURN

    1. Yanay Rosen
    2. Maria Brbić
    3. Yusuf Roohani
    4. Kyle Swanson
    5. Ziang Li
    6. Jure Leskovec

    Reviewed by Arcadia Science

    8 evaluationsAppears in 1 listLatest version Latest activity

  5. IAMSAM: image-based analysis of molecular signatures using the Segment Anything Model

    1. Dongjoo Lee
    2. Jeongbin Park
    3. Seungho Cook
    4. Seongjin Yoo
    5. Daeseung Lee
    6. Hongyoon Choi

    Reviewed by Arcadia Science

    1 evaluationAppears in 1 listLatest version Latest activity

  6. CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images

    1. Harshavardhan Khare
    2. Nathaly Dongo Mendoza
    3. Chiara Zurzolo

    Reviewed by Arcadia Science

    2 evaluationsAppears in 1 listLatest version Latest activity

  7. LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

    1. Dora Obodo
    2. Elliot H. Outland
    3. Jacob J. Hughey

    Reviewed by Review Commons

    4 evaluationsAppears in 1 listLatest version Latest activity

  8. Telomere-to-Telomere Assembly Improves Host Reads Removal in Metagenomic High-Throughput Sequencing of Human Samples

    1. Lei Wang
    2. Guoning Xing

    Reviewed by Arcadia Science

    2 evaluationsAppears in 1 listLatest version Latest activity

  9. An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy

    1. Anup Kumar
    2. Gianmauro Cuccuru
    3. Björn Grüning
    4. Rolf Backofen

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  10. DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

    1. Patrick König
    2. Sebastian Beier
    3. Martin Mascher
    4. Nils Stein
    5. Matthias Lange
    6. Uwe Scholz

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity
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