1. High-accuracy mapping of human and viral direct physical protein-protein interactions using the novel computational system AlphaFold-pairs

    This article has 6 authors:
    1. Christian Poitras
    2. Felix Lamontagne
    3. Nathalie Grandvaux
    4. Hao Song
    5. Maxime Pinard
    6. Benoit Coulombe

    Reviewed by Arcadia Science

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  2. AlphaFold2 predicts interactions amidst confounding structural compatibility

    This article has 1 author:
    1. Juliette Martin

    Reviewed by Arcadia Science

    This article has 6 evaluationsAppears in 1 listLatest version Latest activity
  3. Comparison of de novo and reference genome-based transcriptome assembly pipelines for differential expression analysis of RNA sequencing data

    This article has 6 authors:
    1. Rebekah A. Oomen
    2. Halvor Knutsen
    3. Esben M. Olsen
    4. Sissel Jentoft
    5. Nils Chr. Stenseth
    6. Jeffrey A. Hutchings

    Reviewed by Arcadia Science

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  4. Targeted decontamination of sequencing data with CLEAN

    This article has 8 authors:
    1. Marie Lataretu
    2. Sebastian Krautwurst
    3. Matthew R Huska
    4. Mike Marquet
    5. Adrian Viehweger
    6. Sascha D Braun
    7. Christian Brandt
    8. Martin Hölzer

    Reviewed by Arcadia Science

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  5. Bashing irreproducibility with shournal

    This article has 3 authors:
    1. Tycho Kirchner
    2. Konstantin Riege
    3. Steve Hoffmann

    Reviewed by Arcadia Science

    This article has 12 evaluationsAppears in 1 listLatest version Latest activity
  6. The necessity of considering enzymes as compartments in constraint-based genome-scale metabolic models

    This article has 7 authors:
    1. Xue Yang
    2. Zhitao Mao
    3. Jianfeng Huang
    4. Ruoyu Wang
    5. Huaming Dong
    6. Yanfei Zhang
    7. Hongwu Ma

    Reviewed by PREreview

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  7. MetaCerberus: distributed highly parallelized scalable HMM-based implementation for robust functional annotation across the tree of life

    This article has 4 authors:
    1. Jose L. Figueroa
    2. Eliza Dhungel
    3. Cory R. Brouwer
    4. Richard Allen White

    Reviewed by Arcadia Science

    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  8. Metaphor - A workflow for streamlined assembly and binning of metagenomes

    This article has 8 authors:
    1. Vinícius W. Salazar
    2. Babak Shaban
    3. Maria del Mar Quiroga
    4. Robert Turnbull
    5. Edoardo Tescari
    6. Vanessa Rossetto Marcelino
    7. Heroen Verbruggen
    8. Kim-Anh Lê Cao

    Reviewed by GigaScience

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  9. Hetnet connectivity search provides rapid insights into how two biomedical entities are related

    This article has 12 authors:
    1. Daniel S. Himmelstein
    2. Michael Zietz
    3. Vincent Rubinetti
    4. Kyle Kloster
    5. Benjamin J. Heil
    6. Faisal Alquaddoomi
    7. Dongbo Hu
    8. David N. Nicholson
    9. Yun Hao
    10. Blair D. Sullivan
    11. Michael W. Nagle
    12. Casey S. Greene

    Reviewed by GigaScience

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  10. SODAR: managing multi-omics study data and metadata

    This article has 7 authors:
    1. Mikko Nieminen
    2. Oliver Stolpe
    3. Mathias Kuhring
    4. January Weiner
    5. Patrick Pett
    6. Dieter Beule
    7. Manuel Holtgrewe

    Reviewed by GigaScience

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
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