Bioinformatics

  1. Surface-guided computing to quantify dynamic interactions between cell morphology and molecular signals in 3D

    1. Felix Y. Zhou
    2. Virangika K. Wimalasena
    3. Qiongjing Zou
    4. Andrew Weems
    5. Gabriel M. Gihana
    6. Edward Jenkins
    7. Bingying Chen
    8. Bo-Jui Chang
    9. Meghan Driscoll
    10. Andrew J. Ewald
    11. Gaudenz Danuser

    Reviewed by Arcadia Science

    9 evaluationsAppears in 1 listLatest version Latest activity

  2. AlphaPulldown—a python package for protein–protein interaction screens using AlphaFold-Multimer

    1. Dingquan Yu
    2. Grzegorz Chojnowski
    3. Maria Rosenthal
    4. Jan Kosinski

    Reviewed by Arcadia Science

    2 evaluationsAppears in 1 listLatest version Latest activity

  3. MuDoGeR: Multi-Domain Genome Recovery from metagenomes made easy

    1. Ulisses Nunes da Rocha
    2. Jonas Coelho Kasmanas
    3. René Kallies
    4. Joao Pedro Saraiva
    5. Rodolfo Brizola Toscan
    6. Polonca Štefanič
    7. Marcos Fleming Bicalho
    8. Felipe Borim Correa
    9. Merve Nida Baştürk
    10. Efthymios Fousekis
    11. Luiz Miguel Viana Barbosa
    12. Julia Plewka
    13. Alexander Probst
    14. Petr Baldrian
    15. Peter Stadler
    16. CLUE-TERRA consortium

    Reviewed by Arcadia Science

    14 evaluationsAppears in 1 listLatest version Latest activity

  4. Biologically informed variational autoencoders allow predictive modeling of genetic and drug-induced perturbations

    1. Daria Doncevic
    2. Carl Herrmann

    Reviewed by Arcadia Science

    4 evaluationsAppears in 1 listLatest version Latest activity

  5. Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows

    1. Hirotaka Suetake
    2. Tsukasa Fukusato
    3. Takeo Igarashi
    4. Tazro Ohta

    Reviewed by Arcadia Science, GigaScience

    22 evaluationsAppears in 2 listsLatest version Latest activity

  6. Sex-specificity of the C. elegans metabolome

    1. Russell N. Burkhardt
    2. Alexander B. Artyukhin
    3. Erin Z. Aprison
    4. Brian J. Curtis
    5. Bennett W. Fox
    6. Andreas H. Ludewig
    7. Diana Fajardo Palomino
    8. Jintao Luo
    9. Amaresh Chaturbedi
    10. Oishika Panda
    11. Chester J. J. Wrobel
    12. Victor Baumann
    13. Douglas S. Portman
    14. Siu Sylvia Lee
    15. Ilya Ruvinsky
    16. Frank C. Schroeder

    Reviewed by Arcadia Science

    6 evaluationsAppears in 1 listLatest version Latest activity

  7. aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

    1. Zoé Pochon
    2. Nora Bergfeldt
    3. Emrah Kırdök
    4. Mário Vicente
    5. Thijessen Naidoo
    6. Tom van der Valk
    7. N. Ezgi Altınışık
    8. Maja Krzewińska
    9. Love Dalén
    10. Anders Götherström
    11. Claudio Mirabello
    12. Per Unneberg
    13. Nikolay Oskolkov

    Reviewed by Arcadia Science

    14 evaluationsAppears in 1 listLatest version Latest activity

  8. GutMeta: online microbiome analysis and interactive visualization with build-in curated human gut microbiome database

    1. Yiqi Jiang
    2. Yanfei Wang
    3. Lijia Che
    4. Qian Zhou
    5. Shuaicheng Li

    Reviewed by Arcadia Science

    4 evaluationsAppears in 1 listLatest version Latest activity

  9. The Landscape of Maize-Associated Bacteria and Fungi Across the United States

    1. Corey R Schultz
    2. Hanish Desai
    3. Jason G Wallace

    Reviewed by Arcadia Science

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Robust phylogenetic tree-based microbiome association test using repeatedly measured data for composition bias

    1. Kangjin Kim
    2. Sungho Won

    Reviewed by Arcadia Science

    1 evaluationAppears in 1 listLatest version Latest activity
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