1. Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    This article has 17 authors:
    1. Mehdi Joodaki
    2. Mina Shaigan
    3. Victor Parra
    4. Roman D Bülow
    5. Christoph Kuppe
    6. David L Hölscher
    7. Mingbo Cheng
    8. James S Nagai
    9. Michaël Goedertier
    10. Nassim Bouteldja
    11. Vladimir Tesar
    12. Jonathan Barratt
    13. Ian SD Roberts
    14. Rosanna Coppo
    15. Rafael Kramann
    16. Peter Boor
    17. Ivan G Costa

    Reviewed by Review Commons

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  2. GADMA2: more efficient and flexible demographic inference from genetic data

    This article has 6 authors:
    1. Ekaterina Noskova
    2. Nikita Abramov
    3. Stanislav Iliutkin
    4. Anton Sidorin
    5. Pavel Dobrynin
    6. Vladimir I Ulyantsev

    Reviewed by GigaScience

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  3. KGML-xDTD: a knowledge graph–based machine learning framework for drug treatment prediction and mechanism description

    This article has 4 authors:
    1. Chunyu Ma
    2. Zhihan Zhou
    3. Han Liu
    4. David Koslicki

    Reviewed by GigaScience

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  4. High-accuracy mapping of human and viral direct physical protein-protein interactions using the novel computational system AlphaFold-pairs

    This article has 6 authors:
    1. Christian Poitras
    2. Felix Lamontagne
    3. Nathalie Grandvaux
    4. Hao Song
    5. Maxime Pinard
    6. Benoit Coulombe

    Reviewed by Arcadia Science

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  5. AlphaFold2 predicts interactions amidst confounding structural compatibility

    This article has 1 author:
    1. Juliette Martin

    Reviewed by Arcadia Science

    This article has 6 evaluationsAppears in 1 listLatest version Latest activity
  6. Comparison of de novo and reference genome-based transcriptome assembly pipelines for differential expression analysis of RNA sequencing data

    This article has 6 authors:
    1. Rebekah A. Oomen
    2. Halvor Knutsen
    3. Esben M. Olsen
    4. Sissel Jentoft
    5. Nils Chr. Stenseth
    6. Jeffrey A. Hutchings

    Reviewed by Arcadia Science

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  7. Targeted decontamination of sequencing data with CLEAN

    This article has 8 authors:
    1. Marie Lataretu
    2. Sebastian Krautwurst
    3. Matthew R Huska
    4. Mike Marquet
    5. Adrian Viehweger
    6. Sascha D Braun
    7. Christian Brandt
    8. Martin Hölzer

    Reviewed by Arcadia Science

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  8. Bashing irreproducibility with shournal

    This article has 3 authors:
    1. Tycho Kirchner
    2. Konstantin Riege
    3. Steve Hoffmann

    Reviewed by Arcadia Science

    This article has 12 evaluationsAppears in 1 listLatest version Latest activity
  9. The necessity of considering enzymes as compartments in constraint-based genome-scale metabolic models

    This article has 7 authors:
    1. Xue Yang
    2. Zhitao Mao
    3. Jianfeng Huang
    4. Ruoyu Wang
    5. Huaming Dong
    6. Yanfei Zhang
    7. Hongwu Ma

    Reviewed by PREreview

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  10. MetaCerberus: distributed highly parallelized scalable HMM-based implementation for robust functional annotation across the tree of life

    This article has 4 authors:
    1. Jose L. Figueroa
    2. Eliza Dhungel
    3. Cory R. Brouwer
    4. Richard Allen White

    Reviewed by Arcadia Science

    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
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