Bioinformatics
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gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes
This article has 2 authors:Reviewed by GigaScience
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PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata
This article has 6 authors:Reviewed by GigaScience
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Omada: robust clustering of transcriptomes through multiple testing
This article has 7 authors:Reviewed by GigaScience
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Structure-aware protein sequence alignment using contrastive learning
This article has 3 authors:Reviewed by Arcadia Science
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Protein Set Transformer: A protein-based genome language model to power high diversity viromics
This article has 3 authors:Reviewed by Arcadia Science
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Autoprot: Processing, Analysis and Visualization of Proteomics Data in Python
This article has 5 authors:Reviewed by Arcadia Science
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GenomeDelta: detecting recent transposable element invasions without repeat library
This article has 3 authors:Reviewed by Arcadia Science
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Limitations of current machine learning models in predicting enzymatic functions for uncharacterized proteins
This article has 6 authors:Reviewed by Arcadia Science
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Exploring the accuracy of ab initio prediction methods for viral pseudoknotted RNA structures
This article has 5 authors:Reviewed by PREreview
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Design of linear and cyclic peptide binders of different lengths from protein sequence information
This article has 3 authors:Reviewed by PREreview