Evaluated articles

Gene family expansions underpin context-dependency of the oldest mycorrhizal symbiosis

1. Damian J. Hernandez
2. Gwendolyn B. Pohlmann
3. Michelle E. Afkhami

Reviewed by Arcadia Science

A conserved phenylalanine motif among Teleost fish provides insight for improving electromagnetic perception

1. Brianna Ricker
2. E. Alejandro Castellanos Franco
3. Gustavo de los Campos
4. Galit Pelled
5. Assaf A. Gilad

Reviewed by Arcadia Science

CRISPR screens and lectin microarrays identify novel high mannose N-glycan regulators

1. C Kimberly Tsui
2. Nicholas Twells
3. Emma Doan
4. Jacqueline Woo
5. Noosha Khosrojerdi
6. Janiya Brooks
7. Ayodeji Kulepa
8. Brant Webster
9. Lara K Mahal
10. Andrew Dillin

Reviewed by Arcadia Science

Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps

1. Xianxin Zhao
2. Yuanyuan Liu
3. Yi Yang
4. Chun He
5. Kevin C. Chan
6. Haiwei Lin
7. Qi Fang
8. Gongyin Ye
9. Xinhai Ye

Reviewed by Arcadia Science

Photophysics-informed two-photon voltage imaging using FRET-opsin voltage indicators

1. F. Phil Brooks
2. Hunter C. Davis
3. Pojeong Park
4. Yitong Qi
5. Adam E. Cohen

Reviewed by Arcadia Science

CAnDI: a new tool to investigate conflict in homologous gene trees and explain convergent trait evolution

1. Holly M. Robertson
2. Joseph F. Walker
3. Edwige Moyroud

Reviewed by Arcadia Science

Reducing the Bacterial Lag Phase Through Methylated Compounds: Insights from Algal-Bacterial Interactions

1. Martin Sperfeld
2. Delia A. Narváez-Barragán
3. Sergey Malitsky
4. Veronica Frydman
5. Lilach Yuda
6. Jorge Rocha
7. Einat Segev

Reviewed by Arcadia Science

CELEBRIMBOR: Pangenomes from metagenomes

1. Joel Hellewell
2. Samuel T. Horsfield
3. Johanna von Wachsmann
4. Tatiana Gurbich
5. Robert D. Finn
6. Zamin Iqbal
7. Leah W. Roberts
8. John A. Lees

Reviewed by Arcadia Science

Genes in Humans and Mice: Insights from Deep learning of 777K Bulk Transcriptomes

1. Zheng Su
2. Mingyan Fang
3. Andrei Smolnikov
4. Fatemeh Vafaee
5. Marcel E. Dinger
6. Emily C. Oates

Reviewed by Arcadia Science

An evolutionary cell biology perspective into the diverging mechanisms of clathrin-mediated endocytosis in dikarya fungi

1. Andrea Picco
2. Christopher P. Toret
3. Anne-Sophie Rivier-Cordey
4. Marko Kaksonen

Reviewed by Arcadia Science

The Evolutionary Origins and Ancestral Features of Septins

1. Samed Delic
2. Brent Shuman
3. Shoken Lee
4. Shirin Bahmanyar
5. Michelle Momany
6. Masayuki Onishi

Reviewed by Arcadia Science

Machine Learning Assisted Spectral Fingerprinting for Immune Cell Phenotyping

1. Aceer Nadeem
2. Sarah Lyons
3. Aidan Kindopp
4. Amanda Jamieson
5. Daniel Roxbury

Reviewed by Arcadia Science

Evaluating generalizability of artificial intelligence models for molecular datasets

1. Yasha Ektefaie
2. Andrew Shen
3. Daria Bykova
4. Maximillian Marin
5. Marinka Zitnik
6. Maha Farhat

Reviewed by Arcadia Science

Assessment of Gene Set Enrichment Analysis using curated RNA-seq-based benchmarks

1. Julián Candia
2. Luigi Ferrucci

Reviewed by Arcadia Science

Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools

1. Dan Biderman
2. Matthew R Whiteway
3. Cole Hurwitz
4. Nicholas Greenspan
5. Robert S Lee
6. Ankit Vishnubhotla
7. Richard Warren
8. Federico Pedraja
9. Dillon Noone
10. Michael Schartner
11. Julia M Huntenburg
12. Anup Khanal
13. Guido T Meijer
14. Jean-Paul Noel
15. Alejandro Pan-Vazquez
16. Karolina Z Socha
17. Anne E Urai
18. The International Brain Laboratory
19. John P Cunningham
20. Nathaniel B Sawtell
21. Liam Paninski

Reviewed by Arcadia Science

Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25

1. P Richard J Yulo
2. Nicolas Desprat
3. Monica L Gerth
4. Barbara Ritzl-Rinkenberger
5. Andrew D Farr
6. Yunhao Liu
7. Xue-Xian Zhang
8. Michael Miller
9. Felipe Cava
10. Paul B Rainey
11. Heather L Hendrickson

• Curated by eLife

  eLife Assessment

  This valuable study combines evolution experiments with molecular and genetic techniques to study how a genetic lesion in MreB that causes rod-shape cells to become spherical, with concomitant deleterious fitness effects, can be rescued by natural selection. The results are convincing, although further improvement of the statistical analyses and figure presentation, and further clarification of the concrete contribution of the paper and how it relates to previous literature, would be welcome.

Reviewed by eLife, Arcadia Science

Predicting microbial growth conditions from amino acid composition

1. Tyler P. Barnum
2. Alexander Crits-Christoph
3. Michael Molla
4. Paul Carini
5. Henry H. Lee
6. Nili Ostrov

Reviewed by Arcadia Science

Dueling Endogenous Viral-Like Sequences Control Synaptic Plasticity

1. P. Githure M’Angale
2. Adrienne Lemieux
3. Yumeng Liu
4. Jasmine Graslie
5. Shuhao Wang
6. Alfred Simkin
7. Vivian Budnik
8. Brian A. Kelch
9. Travis Thomson

Reviewed by Arcadia Science

The Diverse Evolutionary Histories of Domesticated Metaviral Capsid Genes in Mammals

1. William S Henriques
2. Janet M Young
3. Artem Nemudryi
4. Anna Nemudraia
5. Blake Wiedenheft
6. Harmit S Malik

Reviewed by Arcadia Science

Clonal-aggregative multicellularity entrained by salinity in one of the closest relative of animals

1. Núria Ros-Rocher
2. Josean Reyes-Rivera
3. Uzuki Horo
4. Yeganeh Foroughijabbari
5. Chantal Combredet
6. Ben T. Larson
7. Maxwell C. Coyle
8. Erik A. T. Houtepen
9. Mark J. A. Vermeij
10. Jacob L. Steenwyk
11. Thibaut Brunet

Reviewed by Arcadia Science