Showing page 11 of 438 pages of list content

  1. In vivo virus-free lineage tracing and live imaging reveal that NeuroD1 does not reprogram microglia into neurons

    This article has 11 authors:
    1. Xiaoyu Li
    2. Yuxin Li
    3. Yue Cao
    4. Niewen Hu
    5. Baozhi Yang
    6. Pei Ouyang
    7. Yuxiao Jin
    8. Shuai Gao
    9. Li Cao
    10. Bo Peng
    11. Yanxia Rao
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This is an important study addressing a debated question in brain repair research by testing whether NeuroD1 can convert brain immune cells into nerve cells using a virus-free genetic approach and live imaging. The compelling evidence presented here supports that, under the conditions tested, NeuroD1-expressing cells do not become nerve cells and instead retain their original identity. This work will be of interest to neuro-immunologists.

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    This article has 7 evaluationsAppears in 1 listLatest version Latest activity
  2. The digital sphinx: Can a worm brain control a fly body?

    This article has 4 authors:
    1. Bingni W Brunton
    2. Elliott TT Abe
    3. Lawrence Jianqiao Hu
    4. John C Tuthill
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      What can a neural network trained to imitate animal behavior tell us about biology? This valuable work uses deep reinforcement learning to train an artificial neural network to transform the dynamics of a recurrent neural network based on the C. elegans connectome into an adult Drosophila walking program in a physical model of the fly body, demonstrating that achieving plausible output dynamics does not in and of itself imply biologically meaningful simulation. Evidence for this basic claim is solid, but more extensive analyses, better methodological description, and a discussion of deeper challenges in the undertaking of biological brain modeling would strengthen the study. This result demands the attention of the practitioners of the growing field of connectome simulation for the purpose of gaining mechanistic understanding of nervous system function.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  3. cuBNM: GPU-Accelerated Brain Network Modeling

    This article has 10 authors:
    1. Amin Saberi
    2. Bin Wan
    3. Kevin J Wischnewski
    4. Kyesam Jung
    5. Leonard Sasse
    6. Felix Hoffstaedter
    7. Boris C Bernhardt
    8. Simon B Eickhoff
    9. Oleksandr V Popovych
    10. Sofie L Valk
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study introduces an open-source software package that improves the computational efficiency of whole-brain modelling and facilitates individualised model fitting in large neuroimaging cohorts. The evidence is convincing for the main computational and practical claims, supported by evaluations across multiple optimisation strategies, speed benchmarks, and demonstrations using human neuroimaging data. Its modular design and documentation should make it a resource that is of value to researchers interested in scalable and individualised brain network modelling.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  4. Modeling the prodromal phase of Alzheimer’s disease: Selective amyloid-driven failure of cholinergic medial septal neurons perturbs REM sleep, cognition, emotion, and broadcasts pathology in aging mice

    This article has 11 authors:
    1. Mathieu Nollet
    2. Wei Ba
    3. Berta Anuncibay Soto
    4. Chunyu Yin
    5. Leda Lignos
    6. Katarina Jovic
    7. Sara Wong
    8. Alexei L Vyssotski
    9. Raquel Yustos
    10. Nicholas P Franks
    11. William Wisden
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This is a valuable study of the effects of selective or broadband amyloid deposition in medial septum (MS) cholinergic neurons on neuropathology, cognition, sleep, and hyperexcitability in aging mice carrying risk factors for Alzheimer's disease (AD). The investigation is still incomplete, with some weaknesses related to conceptualization and methodology that need to be addressed.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  5. Rhythmic temporal structure organizes recurrent dynamics to support sequential working memory

    This article has 5 authors:
    1. Yitao Qin
    2. Yun Yang
    3. Qizhi Yang
    4. Qinglai Wei
    5. Tielin Zhang
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable study demonstrates how rhythmic inputs can shape sequential working memory. The study puts forward plausible dynamic mechanisms, but some of the central behavioral effects are small, so the evidence - at present - remains incomplete.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  6. Population-level temporal decoding and dynamical structure in frontostriatal circuits during decision making

    This article has 7 authors:
    1. Adam B Goldring
    2. Anandita De
    3. Tanner Stevenson
    4. Kendall Stewart
    5. Aya Akhmetzhanova
    6. Rishidev Chaudhuri
    7. Timothy D Hanks
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study provides new insight into how frontostriatal circuits encode elapsed time and exhibit decision-related dynamics during an auditory change-detection task. Analyses of simultaneously recorded neurons from the frontal orienting field (FOF) and anterior dorsal striatum (ADS) provide solid evidence that FOF and ADS show similar dynamics during evidence accumulation, but that FOF shows stronger movement-aligned reorganization near the time of the decision report. However, the mechanistic interpretation would be strengthened by clearer links between the population-level analyses, single-neuron activity, and relevant circuit anatomy. The work will be of broad interest to systems neuroscientists studying timing, decision-making, and frontostriatal dynamics.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  7. A transient hypothalamic CRH signal coordinates social investigation in mice

    This article has 5 authors:
    1. Ibukun Akinrinade
    2. Meenakshi Pardasani
    3. Toni-Lee Sterley
    4. Tamás Füzesi
    5. Jaideep S Bains
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study combines behavioral testing, fiber photometry recordings, and optogenetic manipulations to understand the role of CRH+ neurons in the PVN of the hypothalamus in social and non-social settings, while varying the degree of familiarity. The approaches used and the finding that these neurons respond to various social (and non-social) stimuli are strong; however, the conclusion that the activity of these neurons is driven solely by unfamiliar situations and the lack of dynamic analysis of fiber photometry data leaves the manuscript incomplete. This elegant study will likely be of interest to the field of social neuroscience and, if outstanding issues are addressed, would expand our understanding of the role of the PVN in behavior.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  8. Alzheimer disease: The proposed role of tanycytes in the formation of tau tangles and amyloid beta plaques in human brain

    This article has 3 authors:
    1. Ruth Fabian-Fine
    2. Abigail G Roman
    3. Adam L Weaver
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The authors propose the existence of an AQP4-positive tanycyte-associated canal system in the hippocampus based on histological, ultrastructural, immunohistochemical, and RNA-based approaches. There are serious concerns regarding the evidence, and the identification of the tanycyte-related structures can be questioned. At this stage, the evidence for the central claims of the manuscript has to be regarded as inadequate.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  9. An innovative tool for non-invasive contact-free pathogen monitoring in animal saliva

    This article has 13 authors:
    1. Maristela Martins de Camargo
    2. Aspen Caim Fernandes Gonçalves
    3. Diana Netto Hernandez Blazquez
    4. Maggie E Weber
    5. Washington Agostinho
    6. Zubin Kremer Guha
    7. Melissa Sá Fernandes
    8. Mariana Furtado
    9. Aaron Dollar
    10. Paulo BrandĂŁo
    11. Serap Aksoy
    12. Vanessa O Ezenwa
    13. Dawn Zimmerman
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This work describes a valuable method for monitoring pathogens using an innovative, field-deployable device that attracts animals and collects saliva on filter paper in a non-invasive manner. While the strategy is effective at collecting samples and ensuring their preservation, support for some claims remains incomplete. This study will interest scientists in various fields, ranging from biodiversity, ecology, and conservation to infectious diseases and public health.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  10. Identifying Novel Estrogenic Mitochondrial Targets in Hypothalamic Proopiomelanocortin Neurons by Chemoproteomics

    This article has 18 authors:
    1. Jian Qiu
    2. Martha A Bosch
    3. Mya Wolfe
    4. Ksenija Korac
    5. Stefano Rizzo
    6. Todd L Stincic
    7. Scotland E Farley
    8. Wendy Fitzgerald
    9. Megha Rajendran
    10. Aurélien Laguerre
    11. Frank Stein
    12. Philip F Copenhaver
    13. Oline K Rønnekleiv
    14. Sean M Rønnekleiv-Kelly
    15. Tatiana K Rostovtseva
    16. Sergey M Bezrukov
    17. Carsten Schultz
    18. Martin J Kelly
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable study employs an innovative chemoproteomic and multi-modal experimental approach to support VDAC2 as a key functional mediator of STX effects on mitochondrial bioenergetics. The authors assimilated convincing evidence for targeting VDAC2 within POMC neurons to demonstrate neuroprotective therapies against Alzheimer's disease and menopause-associated neurodegeneration, with the potential to minimize adverse off-target side effects.

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    This article has 7 evaluationsAppears in 1 listLatest version Latest activity
  11. Closed-loop neurofeedback reshapes preparatory brain states to bias subsequent pain processing

    This article has 8 authors:
    1. Yinhua Zhang
    2. Shuang Qiu
    3. Qianqian Zheng
    4. Shihao Chen
    5. Jia Li
    6. Xiaoyun Li
    7. Richu Jin
    8. Weiwei Peng
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      In this valuable study, Zhang et al. investigated EEG neurofeedback as a method to modulate brain activity prior to painful stimulation and examined its effect on pain perception in a well-powered, double-blind study. Results showed that real, but not sham, feedback enabled learning-dependent enhancement of pre-stimulus α oscillations. However, the evidence for a neurofeedback-specific reduction in pain remains incomplete, as the current paradigm cannot distinguish between genuine neurofeedback effects and placebo effects. Nonetheless, this work is likely to be of interest to researchers in the fields of neurofeedback and pain.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  12. A shared neural code for gender across faces, bodies, and objects in the human brain

    This article has 7 authors:
    1. Wenjie Liu
    2. Xiqian Lu
    3. Yuhui Cheng
    4. Ruidi Wang
    5. Xinquan Lu
    6. Xiangyong Yuan
    7. Yi Jiang
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study investigates whether perceived gender is represented in the brain in a category-invariant manner across faces, bodies, and objects, identifying the right middle temporal gyrus (rMTG) as a potential locus. The evidence is incomplete due to major conceptual concerns, weak statistical methods, and unaddressed low-level confounds like stimulus size and motion. This work will be of interest to psychology and social neuroscience researchers in face and person perception literature, provided the authors temper their claims regarding abstract representation.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  13. Reproductive experience promotes permanent body growth independently of growth hormone

    This article has 13 authors:
    1. Gabriel O de Souza
    2. Willian O dos Santos
    3. Frederick Wasinski
    4. Ligia MM de Sousa
    5. Andressa G Amaral
    6. Daniela O Gusmao
    7. Edward O List
    8. John J Kopchick
    9. Gimena Fernandez
    10. Mario PerellĂł
    11. Carla RP Oliveira
    12. Manuel H Aguiar-Oliveira
    13. Jose Donato
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study reports a novel phenomenon of maternal growth during pregnancy that is independent of growth hormone (GH), adding a new dimension to maternal biology of reproduction. The evidence is convincing and supported by state-of-the-art methodologies conducted in mice and persuasive, interesting and unique observations in humans with hereditary isolated GH deficiency.

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    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  14. Hierarchical Neural Circuit Theory of Normalization and Inter-areal Communication

    This article has 4 authors:
    1. Asit Pal
    2. Shivang Rawat
    3. David J Heeger
    4. Stefano Martiniani
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study extends a model of cortical normalization (ORGaNICs) to interacting cortical areas and shows that communication through coherence and communication subspaces can arise from a single set of dynamics. The evidence is convincing, showing analytically that contrast-dependent gamma dynamics and a low-dimensional inter-areal communication subspace arise from one parameter set. The work will interest neuroscientists and theorists concerned with inter-areal communication, cortical oscillations, and divisive normalization.

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    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  15. dbGIST: An LLM-Assisted Multi-Omics Resource for Target Exploration and Cross-Dataset Validation in Gastrointestinal Stromal Tumors

    This article has 20 authors:
    1. Zhao Sun
    2. Qian Zhao
    3. Jie-Han Li
    4. Jia-Jing Li
    5. Hao Liu
    6. Yan-Xu Guo
    7. Ya-Dong Tang
    8. Fei Yang
    9. Xin Liu
    10. San-Fei Peng
    11. Wunan Mi
    12. Ge Zhang
    13. Zhen Zhang
    14. Ming-Liang Yuan
    15. Guang-Hui Li
    16. Yun-Fei Wang
    17. Chao Liu
    18. Sheng-Lei Li
    19. Jing-Hua Yang
    20. Yang Fu
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The paper provides a valuable, foundational dataset that will undoubtedly provide substantial value to the cancer research community. The aggregation and harmonization of a broad, rich, multi-omic dataset is convincing and will potentially support further downstream research on GIST, which currently has poor supporting datasets. Support for the accompanying claims is more incomplete, however: the biological demonstration rests on a single gene tested by one approach, several analyses lack sample sizes and multiple-testing correction, the claims made for the LLM assistant are not backed by direct evaluation, and the curated data matrices would ideally be deposited independently of the web.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  16. Functional Convergence of Genetically Diverse B-Cell Receptors in Simian-HIV Infected Rhesus Macaques

    This article has 16 authors:
    1. Shengli Song
    2. Hui Li
    3. Chen-Hao Yeh
    4. Akiko Watanabe
    5. Masayuki Kuraoka
    6. Hongmei Gao
    7. Xiaoying Shen
    8. Celia C. LaBranche
    9. Wilton B. Williams
    10. Kevin O. Saunders
    11. M. Anthony Moody
    12. Kevin Wiehe
    13. David C. Montefiori
    14. Barton. F. Haynes
    15. George M. Shaw
    16. Garnett Kelsoe
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable study characterizes how antibody responses converge on similar functional solutions despite diverse genetic backgrounds, providing a resource that is of importance in understanding immune responses and informing vaccine research. The evidence is solid, with extensive and well-executed analyses supporting the primary findings, although broader conclusions regarding vaccine design would benefit from more cautious interpretation and fuller discussion of the study's limitations. The work will be of interest to researchers studying antibody responses, viral evolution, and vaccine development.

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  17. Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    This article has 2 authors:
    1. Marlin D Figgins
    2. Trevor Bedford
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      In this important work, the authors develop methods to forecast epidemic growth from viral sequencing data alone. The evidence for the usefulness of the approach is solid, but some justifications and methodological details are incomplete. This study should be of broad interest to the community interested in viral dynamics and epidemiology.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  18. Quantitative modelling of biological response dynamics reveals novel patterns in plant volatile signalling

    This article has 5 authors:
    1. Jamie M. Waterman
    2. Gareth J. Moore
    3. Loren K. Amdahl-Culleton
    4. Sara Hoefer
    5. Matthias Erb
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study presents the development of a model to quantify the dynamics of stress-induced volatile emissions in plants and identify biologically relevant differences in these responses. The model is based on a convincing methodology and represents a starting point for studies of similar responses in other plants or investigations of induced phenotypes in different biological systems.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  19. Characterising semantic prioritisation in visual working memory

    This article has 3 authors:
    1. Casper Kerrén
    2. Carlos González-García
    3. Juan Linde-Domingo
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This useful study addresses a timely question about semantic prioritisation in visual working memory, using behavioural manipulations and drift-diffusion modelling. However, the strength of evidence is incomplete for the broader claims about working-memory representations because the main interpretation relies on indirect inferences from non-decision time, which cannot uniquely identify memory access or retrieval.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  20. Molecular basis of mitogen-activated protein kinase ERK2 activation by its upstream kinase MEK1

    This article has 8 authors:
    1. Jill von Velsen
    2. Pauline Juyoux
    3. Nicola Piasentin
    4. Hayden Fisher
    5. Karine Lapouge
    6. Oscar Vadas
    7. Francesco Luigi Gervasio
    8. Matthew W. Bowler
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The manuscript by von Velsen et al. offers valuable structural insights into the mitogen-activated protein kinase (MAPK) pathway by providing cryo-EM structures of stabilized MEK1-ERK2 kinase-substrate complexes in inactive, active, and nucleotide-free states, complemented by HDX-MS, SAXS, ITC, crystallography, and molecular dynamics. The work provides solid evidence for the overall architecture of the complex and identifies interaction sites that help explain MAPK pathway specificity. However, some mechanistic conclusions are not yet fully supported, particularly the designation of one state as an active phosphoryl-transfer configuration, the claim that substrate binding releases the MEK1 catalytic machinery, the proposed link to processive phosphorylation, and the extrapolation to disease-associated mutations.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity