Castedo's selected articles

The temporal and genomic scale of selection following hybridization

1. Jeffrey S. Groh
2. Graham Coop

Developing an evolutionary baseline model for humans: jointly inferring purifying selection with population history

1. Parul Johri
2. Susanne P. Pfeifer
3. Jeffrey D. Jensen

slendr: a framework for spatio-temporal population genomic simulations on geographic landscapes

1. Martin Petr
2. Benjamin C. Haller
3. Peter L. Ralph
4. Fernando Racimo

Reviewed by Peer Community in Evolutionary Biology

Recommendations for accelerating open preprint peer review to improve the culture of science

1. Michele Avissar-Whiting
2. Frédérique Belliard
3. Stefano M. Bertozzi
4. Amy Brand
5. Katherine Brown
6. Géraldine Clément-Stoneham
7. Stephanie Dawson
8. Gautam Dey
9. Daniel Ecer
10. Scott C. Edmunds
11. Ashley Farley
12. Tara D. Fischer
13. Maryrose Franko
14. James S. Fraser
15. Kathryn Funk
16. Clarisse Ganier
17. Melissa Harrison
18. Anna Hatch
19. Haley Hazlett
20. Samantha Hindle
21. Daniel W. Hook
22. Phil Hurst
23. Sophien Kamoun
24. Robert Kiley
25. Michael M. Lacy
26. Marcel LaFlamme
27. Rebecca Lawrence
28. Thomas Lemberger
29. Maria Leptin
30. Elliott Lumb
31. Catriona J. MacCallum
32. Christopher Steven Marcum
33. Gabriele Marinello
34. Alex Mendonça
35. Sara Monaco
36. Kleber Neves
37. Damian Pattinson
38. Jessica K. Polka
39. Iratxe Puebla
40. Martyn Rittman
41. Stephen J. Royle
42. Daniela Saderi
43. Richard Sever
44. Kathleen Shearer
45. John E. Spiro
46. Bodo Stern
47. Dario Taraborelli
48. Ron Vale
49. Claudia G. Vasquez
50. Ludo Waltman
51. Fiona M. Watt
52. Zara Y. Weinberg
53. Mark Williams

Local Ancestry Inference for Complex Population Histories

1. Alice Pearson
2. Richard Durbin

Unsupervised Discovery of Ancestry Informative Markers and Genetic Admixture Proportions in Biobank-Scale Data Sets

1. Seyoon Ko
2. Benjamin B. Chu
3. Daniel Peterson
4. Chidera Okenwa
5. Jeanette C. Papp
6. David H. Alexander
7. Eric M. Sobel
8. Hua Zhou
9. Kenneth L. Lange

Deciphering the genetic structure of the Quebec founder population using genealogies

1. Laurence Gagnon
2. Claudia Moreau
3. Catherine Laprise
4. Hélène Vézina
5. Simon L. Girard

Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta Coalescent

1. Kevin Korfmann
2. Thibaut Paul Patrick Sellinger
3. Fabian Freund
4. Matteo Fumagalli
5. Aurélien Tellier

Reviewed by Peer Community in Evolutionary Biology

An island ‘endemic’ born out of hybridization between introduced lineages

1. Jessie F. Salter
2. Robb T. Brumfield
3. Brant C. Faircloth

Evaluation of methods for estimating coalescence times using ancestral recombination graphs

1. Débora Y. C. Brandt
2. Xinzhu Wei
3. Yun Deng
4. Andrew H Vaughn
5. Rasmus Nielsen

Recoverability of ancestral recombination graph topologies

1. Elizabeth Hayman
2. Anastasia Ignatieva
3. Jotun Hein

Ancient DNA from Protohistoric Period Cambodia indicates that South Asians admixed with local populations as early as 1st–3rd centuries CE

1. Piya Changmai
2. Ron Pinhasi
3. Michael Pietrusewsky
4. Miriam T. Stark
5. Rona Michi Ikehara-Quebral
6. David Reich
7. Pavel Flegontov

Reconstructing the genetic history of Kra-Dai speakers from Thailand

1. Piya Changmai
2. Jan Kočí
3. Pavel Flegontov

Whole genome analysis sheds light on the genetic origin of Huns, Avars and conquering Hungarians

1. Zoltán Maróti
2. Endre Neparáczki
3. Oszkár Schütz
4. Kitti Maár
5. Gergely I. B. Varga
6. Bence Kovács
7. Tibor Kalmár
8. Emil Nyerki
9. István Nagy
10. Dóra Latinovics
11. Balázs Tihanyi
12. Antónia Marcsik
13. György Pálfi
14. Zsolt Bernert
15. Zsolt Gallina
16. Ciprián Horváth
17. Sándor Varga
18. László Költő
19. István Raskó
20. Péter L. Nagy
21. Csilla Balogh
22. Albert Zink
23. Frank Maixner
24. Anders Götherström
25. Robert George
26. Csaba Szalontai
27. Gergely Szenthe
28. Erwin Gáll
29. Attila P. Kiss
30. Zsófia Rácz
31. Bence Gulyás
32. Bernadett Ny. Kovacsóczy
33. Szilárd Sándor Gaál
34. Péter Tomka
35. Tibor Török

The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

1. Marta Maria Ciucani
2. Jazmín Ramos-Madrigal
3. Germán Hernández-Alonso
4. Alberto Carmagnini
5. Sabhrina Gita Aninta
6. Xin Sun
7. Camilla Hjorth Scharff-Olsen
8. Liam Thomas Lanigan
9. Ilaria Fracasso
10. Cecilie G. Clausen
11. Jouni Aspi
12. Ilpo Kojola
13. Laima Baltrūnaitė
14. Linas Balčiauskas
15. Jane Moore
16. Mikael Åkesson
17. Urmas Saarma
18. Maris Hindrikson
19. Pavel Hulva
20. Barbora Černá Bolfíková
21. Carsten Nowak
22. Raquel Godinho
23. Steve Smith
24. Ladislav Paule
25. Sabina Nowak
26. Robert W. Mysłajek
27. Sabrina Lo Brutto
28. Paolo Ciucci
29. Luigi Boitani
30. Cristiano Vernesi
31. Hans K. Stenøien
32. Oliver Smith
33. Laurent Frantz
34. Lorenzo Rossi
35. Francesco Maria Angelici
36. Elisabetta Cilli
37. Mikkel-Holger S. Sinding
38. M. Thomas P. Gilbert
39. Shyam Gopalakrishnan

Genetic admixture history and forensic characteristics of Tibeto-Burman-speaking Qiang people explored via the newly developed Y-STR panel and genome-wide SNP data

1. Guanglin He
2. Atif Adnan
3. Wedad Saeed Al-Qahtani
4. Fatmah Ahmed Safhi
5. Hui-Yuan Yeh
6. Sibte Hadi
7. Chuan-Chao Wang
8. Mengge Wang
9. Chao Liu
10. Jun Yao

The spatiotemporal patterns of major human admixture events during the European Holocene

1. Manjusha Chintalapati
2. Nick Patterson
3. Priya Moorjani

• Curated by eLife

  Evaluation Summary:

  This manuscript presents DATES, a method to infer the timing of admixture events using genetic data from present-day or ancient individuals. This is a robust method that is useful in the field of paleogenomics and outperforms existing methods. In this manuscript, DATES is applied to >1000 ancient human genomes to characterize major admixture events during the European Holocene. This work will be of interest to scholars in the fields of population genetics, paleogenomics, archeology, biological anthropology, and history.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

Reviewed by eLife

The genomic landscape of contemporary western Remote Oceanians

1. Lara R. Arauna
2. Jacob Bergstedt
3. Jeremy Choin
4. Javier Mendoza-Revilla
5. Christine Harmant
6. Maguelonne Roux
7. Alex Mas-Sandoval
8. Laure Lémée
9. Heidi Colleran
10. Alexandre François
11. Frédérique Valentin
12. Olivier Cassar
13. Antoine Gessain
14. Lluis Quintana-Murci
15. Etienne Patin

A genetic and linguistic analysis of the admixture histories of the islands of Cabo Verde

1. Romain Laurent
2. Zachary A Szpiech
3. Sergio S da Costa
4. Valentin Thouzeau
5. Cesar A Fortes-Lima
6. Françoise Dessarps-Freichey
7. Laure Lémée
8. José Utgé
9. Noah A Rosenberg
10. Marlyse Baptista
11. Paul Verdu

• Curated by eLife

  Evaluation Summary:

  The authors leverage genotyping data from the islands of Cabo Verde to study its admixture history and to gain insights into the onset of the Trans-Atlantic Slave Trade. They find that patterns of ancestry between the islands are not the same, suggesting diversity in the founding populations of these islands. These results provide a nice example of how ancestry patterns vary across admixed populations due in part to their unique local history and social practices of that time.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 and Reviewer #2 agreed to share their names with the authors.)

Reviewed by eLife

Fast, accurate local ancestry inference with FLARE

1. Sharon R. Browning
2. Ryan K. Waples
3. Brian L. Browning