Evaluated articles

Showing page 8 of 20 pages of list content

The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar

This article has 14 authors:
1. Weihong Qi
2. Yi-Wen Lim
3. Andrea Patrignani
4. Pascal Schläpfer
5. Anna Bratus-Neuenschwander
6. Simon Grüter
7. Christelle Chanez
8. Nathalie Rodde
9. Elisa Prat
10. Sonia Vautrin
11. Margaux-Alison Fustier
12. Diogo Pratas
13. Ralph Schlapbach
14. Wilhelm Gruissem
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 19, 2021Latest activity Apr 8, 2022
Triku: a feature selection method based on nearest neighbors for single-cell data

This article has 5 authors:
1. Alex M. Ascensión
2. Olga Ibañez-Solé
3. Inaki Inza
4. Ander Izeta
5. Marcos J. Araúzo-Bravo
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Feb 13, 2021Latest activity Mar 20, 2022
Genome size evolution in the diverse insect order Trichoptera

This article has 11 authors:
1. Jacqueline Heckenhauer
2. Paul B Frandsen
3. John S Sproul
4. Zheng Li
5. Juraj Paule
6. Amanda M Larracuente
7. Peter J Maughan
8. Michael S Barker
9. Julio V Schneider
10. Russell J Stewart
11. Steffen U Pauls
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes

This article has 2 authors:
1. Romain Feron
2. Robert M Waterhouse
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS

This article has 8 authors:
1. Vivek Sriram
2. Manu Shivakumar
3. Sang-Hyuk Jung
4. Lisa Bang
5. Anurag Verma
6. Seunggeun Lee
7. Eun Kyung Choe
8. Dokyoon Kim
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Oct 27, 2020Latest activity Mar 14, 2022
Fully resolved assembly of Cryptosporidium parvum

This article has 22 authors:
1. Vipin K Menon
2. Pablo C Okhuysen
3. Cynthia L Chappell
4. Medhat Mahmoud
5. Medhat Mahmoud
6. Qingchang Meng
7. Harsha Doddapaneni
8. Vanesa Vee
9. Yi Han
10. Sejal Salvi
11. Sravya Bhamidipati
12. Kavya Kottapalli
13. George Weissenberger
14. Hua Shen
15. Matthew C Ross
16. Kristi L Hoffman
17. Sara Javornik Cregeen
18. Donna M Muzny
19. Ginger A Metcalf
20. Richard A Gibbs
21. Joseph F Petrosino
22. Fritz J Sedlazeck
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework

This article has 6 authors:
1. Matthias Fahrner
2. Melanie Christine Föll
3. Björn Andreas Grüning
4. Matthias Bernt
5. Hannes Röst
6. Oliver Schilling
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Interpretable network-guided epistasis detection

This article has 4 authors:
1. Diane Duroux
2. Héctor Climente-González
3. Chloé-Agathe Azencott
4. Kristel Van Steen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Comparative analysis of common alignment tools for single-cell RNA sequencing

This article has 5 authors:
1. Ralf Schulze Brüning
2. Lukas Tombor
3. Marcel H Schulz
4. Stefanie Dimmeler
5. David John
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
LED light gradient as a screening tool for light quality responses in model plant species

This article has 6 authors:
1. P. Lejeune
2. A. Fratamico
3. F. Bouché
4. S. Huerga Fernández
5. P. Tocquin
6. C. Périlleux
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Oct 8, 2020Latest activity Mar 14, 2022
MBGC: Multiple Bacteria Genome Compressor

This article has 2 authors:
1. Szymon Grabowski
2. Tomasz M Kowalski
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
ExTaxsI: an exploration tool of biodiversity molecular data

This article has 9 authors:
1. Giulia Agostinetto
2. Alberto Brusati
3. Anna Sandionigi
4. Adam Chahed
5. Elena Parladori
6. Bachir Balech
7. Antonia Bruno
8. Dario Pescini
9. Maurizio Casiraghi
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Improved chromosome level genome assembly of the Glanville fritillary butterfly ( Melitaea cinxia ) based on SMRT Sequencing and linkage map

This article has 33 authors:
1. Daniel Blande
2. Olli-Pekka Smolander
3. Virpi Ahola
4. Pasi Rastas
5. Jaakko Tanskanen
6. Juhana I. Kammonen
7. Vicencio Oostra
8. Lorenzo Pellegrini
9. Suvi Ikonen
10. Tad Dallas
11. Michelle F. DiLeo
12. Anne Duplouy
13. Ilhan Cem Duru
14. Pauliina Halimaa
15. Aapo Kahilainen
16. Suyog S. Kuwar
17. Sirpa O. Kärenlampi
18. Elvira Lafuente
19. Shiqi Luo
20. Jenny Makkonen
21. Abhilash Nair
22. Maria de la Paz Celorio-Mancera
23. Ville Pennanen
24. Annukka Ruokolainen
25. Tarja Sundell
26. Arja I. Tervahauta
27. Victoria Twort
28. Erik van Bergen
29. Janina Österman-Udd
30. Lars Paulin
31. Mikko J. Frilander
32. Petri Auvinen
33. Marjo Saastamoinen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 4, 2020Latest activity Mar 14, 2022
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

This article has 11 authors:
1. Francisco M Ortuño
2. Carlos Loucera
3. Carlos S. Casimiro-Soriguer
4. Jose A. Lepe
5. Pedro Camacho Martinez
6. Laura Merino Diaz
7. Adolfo de Salazar
8. Natalia Chueca
9. Federico García
10. Javier Perez-Florido
11. Joaquin Dopazo
Reviewed by GigaScience, ScreenIT

This article has 3 evaluationsAppears in 2 listsLatest version Apr 13, 2021Latest activity Mar 14, 2022
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

This article has 28 authors:
1. Youri Hoogstrate
2. Malgorzata A. Komor
3. René Böttcher
4. Job van Riet
5. Harmen J. G. van de Werken
6. Stef van Lieshout
7. Ralf Hoffmann
8. Evert van den Broek
9. Anne S. Bolijn
10. Natasja Dits
11. Daoud Sie
12. David van der Meer
13. Floor Pepers
14. Chris H. Bangma
15. Geert J. L. H. van Leenders
16. Marcel Smid
17. Pim French
18. John W.M. Martens
19. Wilbert van Workum
20. Peter J. van der Spek
21. Bart Janssen
22. Eric Caldenhoven
23. Christian Rausch
24. Mark de Jong
25. Andrew P. Stubbs
26. Gerrit A. Meijer
27. Remond J.A. Fijneman
28. Guido Jenster
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 17, 2021Latest activity Mar 14, 2022
A high-throughput multiplexing and selection strategy to complete bacterial genomes

This article has 8 authors:
1. Sergio Arredondo-Alonso
2. Anna K Pöntinen
3. François Cléon
4. Rebecca A Gladstone
5. Anita C Schürch
6. Pål J Johnsen
7. Ørjan Samuelsen
8. Jukka Corander
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2021Latest activity Mar 14, 2022
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

This article has 4 authors:
1. Nathan C Sheffield
2. Michał Stolarczyk
3. Vincent P Reuter
4. André F Rendeiro
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2021Latest activity Mar 14, 2022
To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)

This article has 4 authors:
1. Muhammad Zohaib Anwar
2. Anders Lanzen
3. Toke Bang-Andreasen
4. Carsten Suhr Jacobsen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 30, 2019Latest activity Mar 14, 2022
PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

This article has 9 authors:
1. Luis Francisco Hernández Sánchez
2. Bram Burger
3. Carlos Horro
4. Antonio Fabregat
5. Stefan Johansson
6. Pål Rasmus Njølstad
7. Harald Barsnes
8. Henning Hermjakob
9. Marc Vaudel
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 23, 2018Latest activity Mar 14, 2022
A Galaxy-based training resource for single-cell RNA-seq quality control and analyses

This article has 6 authors:
1. Graham J Etherington
2. Nicola Soranzo
3. Suhaib Mohammed
4. Wilfried Haerty
5. Robert P Davey
6. Federica Di Palma
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 4, 2019Latest activity Mar 14, 2022

Evaluated articles

The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar

Triku: a feature selection method based on nearest neighbors for single-cell data

Genome size evolution in the diverse insect order Trichoptera

Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes

NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS

Fully resolved assembly of Cryptosporidium parvum

Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework

Interpretable network-guided epistasis detection

Comparative analysis of common alignment tools for single-cell RNA sequencing

LED light gradient as a screening tool for light quality responses in model plant species

MBGC: Multiple Bacteria Genome Compressor

ExTaxsI: an exploration tool of biodiversity molecular data

Improved chromosome level genome assembly of the Glanville fritillary butterfly ( Melitaea cinxia ) based on SMRT Sequencing and linkage map

From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

A high-throughput multiplexing and selection strategy to complete bacterial genomes

Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)

PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

A Galaxy-based training resource for single-cell RNA-seq quality control and analyses