Evaluated articles

Showing page 9 of 20 pages of list content

Arteria: An automation system for a sequencing core facility

This article has 10 authors:
1. Johan Dahlberg
2. Johan Hermansson
3. Steinar Sturlaugsson
4. Mariya Lysenkova
5. Patrik Smeds
6. Claes Ladenvall
7. Roman Valls Guimera
8. Florian Reisinger
9. Oliver Hofmann
10. Pontus Larsson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear ( Pyrus communis L.)

This article has 22 authors:
1. Gareth Linsmith
2. Stephane Rombauts
3. Sara Montanari
4. Cecilia H Deng
5. Jean-Marc Celton
6. Philippe Guérif
7. Chang Liu
8. Rolf Lohaus
9. Jason D Zurn
10. Alessandro Cestaro
11. Nahla V Bassil
12. Linda V Bakker
13. Elio Schijlen
14. Susan E Gardiner
15. Yves Lespinasse
16. Charles-Eric Durel
17. Riccardo Velasco
18. David B Neale
19. David Chagné
20. Yves Van de Peer
21. Michela Troggio
22. Luca Bianco
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

This article has 10 authors:
1. Melanie Christine Föll
2. Lennart Moritz
3. Thomas Wollmann
4. Maren Nicole Stillger
5. Niklas Vockert
6. Martin Werner
7. Peter Bronsert
8. Karl Rohr
9. Björn Andreas Grüning
10. Oliver Schilling
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

This article has 4 authors:
1. Hong Zheng
2. Kevin Brennan
3. Mikel Hernaez
4. Olivier Gevaert
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

This article has 10 authors:
1. Hui-Su Kim
2. Sungwon Jeon
3. Changjae Kim
4. Yeon Kyung Kim
5. Yun Sung Cho
6. Jungeun Kim
7. Asta Blazyte
8. Andrea Manica
9. Semin Lee
10. Jong Bhak
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

This article has 7 authors:
1. Milad Miladi
2. Eteri Sokhoyan
3. Torsten Houwaart
4. Steffen Heyne
5. Fabrizio Costa
6. Björn Grüning
7. Rolf Backofen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
DENTIST—using long reads for closing assembly gaps at high accuracy

This article has 4 authors:
1. Arne Ludwig
2. Martin Pippel
3. Gene Myers
4. Michael Hiller
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 9, 2022
Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies

This article has 2 authors:
1. Matthew Z DeMaere
2. Aaron E Darling
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 15, 2017Latest activity Feb 20, 2022
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

This article has 5 authors:
1. Yilei Fu
2. Medhat Mahmoud
3. Viginesh Vaibhav Muraliraman
4. Fritz J Sedlazeck
5. Todd J Treangen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2021Latest activity Feb 6, 2022
Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

This article has 8 authors:
1. Lukas M Weber
2. Ariel A Hippen
3. Peter F Hickey
4. Kristofer C Berrett
5. Jason Gertz
6. Jennifer Anne Doherty
7. Casey S Greene
8. Stephanie C Hicks
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2021Latest activity Feb 6, 2022
Bias invariant RNA-seq metadata annotation

This article has 4 authors:
1. Hannes Wartmann
2. Sven Heins
3. Karin Kloiber
4. Stefan Bonn
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 27, 2020Latest activity Feb 6, 2022
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach

This article has 9 authors:
1. Shufang Wu
2. Zhencheng Fang
3. Jie Tan
4. Mo Li
5. Chunhui Wang
6. Qian Guo
7. Congmin Xu
8. Xiaoqing Jiang
9. Huaiqiu Zhu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2021Latest activity Feb 6, 2022
FASTQuick: rapid and comprehensive quality assessment of raw sequence reads

This article has 2 authors:
1. Fan Zhang
2. Hyun Min Kang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 29, 2021Latest activity Feb 6, 2022
CAMITAX: Taxon labels for microbial genomes

This article has 3 authors:
1. Andreas Bremges
2. Adrian Fritz
3. Alice C McHardy
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2020Latest activity Feb 10, 2022
IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

This article has 8 authors:
1. Yun-Ching Chen
2. Abhilash Suresh
3. Chingiz Underbayev
4. Clare Sun
5. Komudi Singh
6. Fayaz Seifuddin
7. Adrian Wiestner
8. Mehdi Pirooznia
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Feb 6, 2022
SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier

This article has 2 authors:
1. Xiao Hu
2. Iddo Friedberg
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Feb 6, 2022
Citation needed? Wikipedia bibliometrics during the first wave of the COVID-19 pandemic

This article has 3 authors:
1. Omer Benjakob
2. Rona Aviram
3. Jonathan Aryeh Sobel
Reviewed by GigaScience, preLights, ScreenIT

This article has 5 evaluationsAppears in 4 listsLatest version Jan 1, 2022Latest activity Feb 2, 2022
The intersectional genetics landscape for humans

This article has 2 authors:
1. Andre Macedo
2. Alisson M Gontijo
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2020Latest activity Jan 31, 2022
Refgenie: a reference genome resource manager

This article has 5 authors:
1. Michał Stolarczyk
2. Vincent P Reuter
3. Jason P Smith
4. Neal E Magee
5. Nathan C Sheffield
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 29, 2020Latest activity Jan 31, 2022
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

This article has 29 authors:
1. Bo Song
2. Yue Song
3. Yuan Fu
4. Elizabeth Balyejusa Kizito
5. Sandra Ndagire Kamenya
6. Pamela Nahamya Kabod
7. Huan Liu
8. Samuel Muthemba
9. Robert Kariba
10. Joyce Njuguna
11. Solomon Maina
12. Francesca Stomeo
13. Appolinaire Djikeng
14. Prasad S Hendre
15. Xiaoli Chen
16. Wenbin Chen
17. Xiuli Li
18. Wenjing Sun
19. Sibo Wang
20. Shifeng Cheng
21. Alice Muchugi
22. Ramni Jamnadass
23. Howard-Yana Shapiro
24. Allen Van Deynze
25. Huanming Yang
26. Jian Wang
27. Xun Xu
28. Damaris Achieng Odeny
29. Xin Liu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Jan 31, 2022

Evaluated articles

Arteria: An automation system for a sequencing core facility

Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear ( Pyrus communis L.)

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

DENTIST—using long reads for closing assembly gaps at high accuracy

Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

Bias invariant RNA-seq metadata annotation

DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads

CAMITAX: Taxon labels for microbial genomes

IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier

Citation needed? Wikipedia bibliometrics during the first wave of the COVID-19 pandemic

The intersectional genetics landscape for humans

Refgenie: a reference genome resource manager

Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome