Evaluated articles

Showing page 7 of 19 pages of list content

Interpretable network-guided epistasis detection

This article has 4 authors:
1. Diane Duroux
2. Héctor Climente-González
3. Chloé-Agathe Azencott
4. Kristel Van Steen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Comparative Analysis of common alignment tools for single cell RNA sequencing

This article has 5 authors:
1. Ralf Schulze Brüning
2. Lukas Tombor
3. Marcel H. Schulz
4. Stefanie Dimmeler
5. David John
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Mar 1, 2021Latest activity Mar 14, 2022
LED light gradient as a screening tool for light quality responses in model plant species

This article has 6 authors:
1. P. Lejeune
2. A. Fratamico
3. F. Bouché
4. S. Huerga Fernández
5. P. Tocquin
6. C. Périlleux
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Oct 8, 2020Latest activity Mar 14, 2022
MBGC: Multiple Bacteria Genome Compressor

This article has 2 authors:
1. Szymon Grabowski
2. Tomasz M Kowalski
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
ExTaxsI: an exploration tool of biodiversity molecular data

This article has 9 authors:
1. Giulia Agostinetto
2. Alberto Brusati
3. Anna Sandionigi
4. Adam Chahed
5. Elena Parladori
6. Bachir Balech
7. Antonia Bruno
8. Dario Pescini
9. Maurizio Casiraghi
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Improved chromosome level genome assembly of the Glanville fritillary butterfly ( Melitaea cinxia ) based on SMRT Sequencing and linkage map

This article has 33 authors:
1. Daniel Blande
2. Olli-Pekka Smolander
3. Virpi Ahola
4. Pasi Rastas
5. Jaakko Tanskanen
6. Juhana I. Kammonen
7. Vicencio Oostra
8. Lorenzo Pellegrini
9. Suvi Ikonen
10. Tad Dallas
11. Michelle F. DiLeo
12. Anne Duplouy
13. Ilhan Cem Duru
14. Pauliina Halimaa
15. Aapo Kahilainen
16. Suyog S. Kuwar
17. Sirpa O. Kärenlampi
18. Elvira Lafuente
19. Shiqi Luo
20. Jenny Makkonen
21. Abhilash Nair
22. Maria de la Paz Celorio-Mancera
23. Ville Pennanen
24. Annukka Ruokolainen
25. Tarja Sundell
26. Arja I. Tervahauta
27. Victoria Twort
28. Erik van Bergen
29. Janina Österman-Udd
30. Lars Paulin
31. Mikko J. Frilander
32. Petri Auvinen
33. Marjo Saastamoinen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 4, 2020Latest activity Mar 14, 2022
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

This article has 11 authors:
1. Francisco M Ortuño
2. Carlos Loucera
3. Carlos S. Casimiro-Soriguer
4. Jose A. Lepe
5. Pedro Camacho Martinez
6. Laura Merino Diaz
7. Adolfo de Salazar
8. Natalia Chueca
9. Federico García
10. Javier Perez-Florido
11. Joaquin Dopazo
Reviewed by GigaScience, ScreenIT

This article has 3 evaluationsAppears in 2 listsLatest version Apr 13, 2021Latest activity Mar 14, 2022
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

This article has 28 authors:
1. Youri Hoogstrate
2. Malgorzata A. Komor
3. René Böttcher
4. Job van Riet
5. Harmen J. G. van de Werken
6. Stef van Lieshout
7. Ralf Hoffmann
8. Evert van den Broek
9. Anne S. Bolijn
10. Natasja Dits
11. Daoud Sie
12. David van der Meer
13. Floor Pepers
14. Chris H. Bangma
15. Geert J. L. H. van Leenders
16. Marcel Smid
17. Pim French
18. John W.M. Martens
19. Wilbert van Workum
20. Peter J. van der Spek
21. Bart Janssen
22. Eric Caldenhoven
23. Christian Rausch
24. Mark de Jong
25. Andrew P. Stubbs
26. Gerrit A. Meijer
27. Remond J.A. Fijneman
28. Guido Jenster
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 17, 2021Latest activity Mar 14, 2022
A high-throughput multiplexing and selection strategy to complete bacterial genomes

This article has 8 authors:
1. Sergio Arredondo-Alonso
2. Anna K Pöntinen
3. François Cléon
4. Rebecca A Gladstone
5. Anita C Schürch
6. Pål J Johnsen
7. Ørjan Samuelsen
8. Jukka Corander
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2021Latest activity Mar 14, 2022
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

This article has 4 authors:
1. Nathan C Sheffield
2. Michał Stolarczyk
3. Vincent P Reuter
4. André F Rendeiro
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2021Latest activity Mar 14, 2022
To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)

This article has 4 authors:
1. Muhammad Zohaib Anwar
2. Anders Lanzen
3. Toke Bang-Andreasen
4. Carsten Suhr Jacobsen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 30, 2019Latest activity Mar 14, 2022
PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

This article has 9 authors:
1. Luis Francisco Hernández Sánchez
2. Bram Burger
3. Carlos Horro
4. Antonio Fabregat
5. Stefan Johansson
6. Pål Rasmus Njølstad
7. Harald Barsnes
8. Henning Hermjakob
9. Marc Vaudel
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 18, 2018Latest activity Mar 14, 2022
A Galaxy-based training resource for single-cell RNA-seq quality control and analyses

This article has 6 authors:
1. Graham J Etherington
2. Nicola Soranzo
3. Suhaib Mohammed
4. Wilfried Haerty
5. Robert P Davey
6. Federica Di Palma
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 6, 2019Latest activity Mar 14, 2022
Arteria: An automation system for a sequencing core facility

This article has 10 authors:
1. Johan Dahlberg
2. Johan Hermansson
3. Steinar Sturlaugsson
4. Mariya Lysenkova
5. Patrik Smeds
6. Claes Ladenvall
7. Roman Valls Guimera
8. Florian Reisinger
9. Oliver Hofmann
10. Pontus Larsson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear ( Pyrus communis L.)

This article has 22 authors:
1. Gareth Linsmith
2. Stephane Rombauts
3. Sara Montanari
4. Cecilia H Deng
5. Jean-Marc Celton
6. Philippe Guérif
7. Chang Liu
8. Rolf Lohaus
9. Jason D Zurn
10. Alessandro Cestaro
11. Nahla V Bassil
12. Linda V Bakker
13. Elio Schijlen
14. Susan E Gardiner
15. Yves Lespinasse
16. Charles-Eric Durel
17. Riccardo Velasco
18. David B Neale
19. David Chagné
20. Yves Van de Peer
21. Michela Troggio
22. Luca Bianco
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

This article has 10 authors:
1. Melanie Christine Föll
2. Lennart Moritz
3. Thomas Wollmann
4. Maren Nicole Stillger
5. Niklas Vockert
6. Martin Werner
7. Peter Bronsert
8. Karl Rohr
9. Björn Andreas Grüning
10. Oliver Schilling
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

This article has 4 authors:
1. Hong Zheng
2. Kevin Brennan
3. Mikel Hernaez
4. Olivier Gevaert
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

This article has 10 authors:
1. Hui-Su Kim
2. Sungwon Jeon
3. Changjae Kim
4. Yeon Kyung Kim
5. Yun Sung Cho
6. Jungeun Kim
7. Asta Blazyte
8. Andrea Manica
9. Semin Lee
10. Jong Bhak
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

This article has 7 authors:
1. Milad Miladi
2. Eteri Sokhoyan
3. Torsten Houwaart
4. Steffen Heyne
5. Fabrizio Costa
6. Björn Grüning
7. Rolf Backofen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2019Latest activity Mar 14, 2022
DENTIST – using long reads for closing assembly gaps at high accuracy

This article has 4 authors:
1. Arne Ludwig
2. Martin Pippel
3. Gene Myers
4. Michael Hiller
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Dec 16, 2021Latest activity Mar 9, 2022

Evaluated articles

Interpretable network-guided epistasis detection

Comparative Analysis of common alignment tools for single cell RNA sequencing

LED light gradient as a screening tool for light quality responses in model plant species

MBGC: Multiple Bacteria Genome Compressor

ExTaxsI: an exploration tool of biodiversity molecular data

Improved chromosome level genome assembly of the Glanville fritillary butterfly ( Melitaea cinxia ) based on SMRT Sequencing and linkage map

From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

A high-throughput multiplexing and selection strategy to complete bacterial genomes

Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)

PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

A Galaxy-based training resource for single-cell RNA-seq quality control and analyses

Arteria: An automation system for a sequencing core facility

Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear ( Pyrus communis L.)

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

DENTIST – using long reads for closing assembly gaps at high accuracy