Evaluated articles

Showing page 6 of 19 pages of list content

Loop detection using Hi-C data with HiCExplorer

This article has 3 authors:
1. Joachim Wolff
2. Rolf Backofen
3. Björn Grüning
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Mar 6, 2020Latest activity Feb 15, 2023
ChemChaste: Simulating spatially inhomogeneous biochemical reaction–diffusion systems for modeling cell–environment feedbacks

This article has 3 authors:
1. Connah G M Johnson
2. Alexander G Fletcher
3. Orkun S Soyer
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Feb 15, 2023
Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

This article has 14 authors:
1. R. Alan Harris
2. Muthuswamy Raveendran
3. Dustin T. Lyfoung
4. Fritz J Sedlazeck
5. Medhat Mahmoud
6. Trent M. Prall
7. Julie A. Karl
8. Harshavardhan Doddapaneni
9. Qingchang Meng
10. Yi Han
11. Donna Muzny
12. Roger W. Wiseman
13. David H. O’Connor
14. Jeffrey Rogers
Reviewed by GigaScience, ScreenIT

This article has 6 evaluationsAppears in 2 listsLatest version Mar 23, 2022Latest activity Feb 15, 2023
A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae

This article has 11 authors:
1. Ziwei Wang
2. Mathieu Rouard
3. Manosh Kumar Biswas
4. Gaetan Droc
5. Dongli Cui
6. Nicolas Roux
7. Franc-Christophe Baurens
8. Xue-Jun Ge
9. Trude Schwarzacher
10. Pat (J S) Heslop-Harrison
11. Qing Liu
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Feb 15, 2023
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification

This article has 7 authors:
1. Chakravarthi Kanduri
2. Milena Pavlović
3. Lonneke Scheffer
4. Keshav Motwani
5. Maria Chernigovskaya
6. Victor Greiff
7. Geir K Sandve
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Feb 15, 2023
Monash DaCRA fPET-fMRI: A dataset for comparison of radiotracer administration for high temporal resolution functional FDG-PET

This article has 8 authors:
1. Sharna D Jamadar
2. Emma X Liang
3. Shenjun Zhong
4. Phillip G D Ward
5. Alexandra Carey
6. Richard McIntyre
7. Zhaolin Chen
8. Gary F Egan
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Feb 14, 2023
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

This article has 19 authors:
1. Jean-Marc Aury
2. Stefan Engelen
3. Benjamin Istace
4. Cécile Monat
5. Pauline Lasserre-Zuber
6. Caroline Belser
7. Corinne Cruaud
8. Hélène Rimbert
9. Philippe Leroy
10. Sandrine Arribat
11. Isabelle Dufau
12. Arnaud Bellec
13. David Grimbichler
14. Nathan Papon
15. Etienne Paux
16. Marion Ranoux
17. Adriana Alberti
18. Patrick Wincker
19. Frédéric Choulet
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Feb 3, 2022Latest activity Nov 27, 2022
Message in a Bottle – Metabarcoding Enables Biodiversity Comparisons Across Ecoregions

This article has 12 authors:
1. D Steinke
2. SL deWaard
3. JE Sones
4. NV Ivanova
5. SWJ Prosser
6. K Perez
7. TWA Braukmann
8. M Milton
9. EV Zakharov
10. JR deWaard
11. S Ratnasingham
12. PDN Hebert
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Jul 6, 2021Latest activity Oct 10, 2022
Tourmaline: a containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

This article has 7 authors:
1. Luke R. Thompson
2. Sean R. Anderson
3. Paul A. Den Uyl
4. Nastassia V. Patin
5. Shen Jean Lim
6. Grant Sanderson
7. Kelly D. Goodwin
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Mar 8, 2022Latest activity Sep 5, 2022
Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants

This article has 10 authors:
1. Leila Fattel
2. Dennis Psaroudakis
3. Colleen F Yanarella
4. Kevin O Chiteri
5. Haley A Dostalik
6. Parnal Joshi
7. Dollye C Starr
8. Ha Vu
9. Kokulapalan Wimalanathan
10. Carolyn J Lawrence-Dill
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Aug 9, 2022
A practical tool for maximal information coefficient analysis

This article has 4 authors:
1. Davide Albanese
2. Samantha Riccadonna
3. Claudio Donati
4. Pietro Franceschi
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 1, 2018Latest activity Jun 23, 2022
Predicting plant biomass accumulation from image-derived parameters

This article has 4 authors:
1. Dijun Chen
2. Rongli Shi
3. Jean-Michel Pape
4. Christian Klukas
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Mar 31, 2016Latest activity Jun 23, 2022
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

This article has 4 authors:
1. Ravin Poudel
2. Lidimarie Trujillo Rodriguez
3. Christopher R Reisch
4. Adam R Rivers
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Apr 8, 2022
The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar

This article has 14 authors:
1. Weihong Qi
2. Yi-Wen Lim
3. Andrea Patrignani
4. Pascal Schläpfer
5. Anna Bratus-Neuenschwander
6. Simon Grüter
7. Christelle Chanez
8. Nathalie Rodde
9. Elisa Prat
10. Sonia Vautrin
11. Margaux-Alison Fustier
12. Diogo Pratas
13. Ralph Schlapbach
14. Wilhelm Gruissem
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 19, 2021Latest activity Apr 8, 2022
Triku: a feature selection method based on nearest neighbors for single-cell data

This article has 5 authors:
1. Alex M. Ascensión
2. Olga Ibañez-Solé
3. Inaki Inza
4. Ander Izeta
5. Marcos J. Araúzo-Bravo
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Feb 16, 2021Latest activity Mar 20, 2022
Genome size evolution in the diverse insect order Trichoptera

This article has 11 authors:
1. Jacqueline Heckenhauer
2. Paul B Frandsen
3. John S Sproul
4. Zheng Li
5. Juraj Paule
6. Amanda M Larracuente
7. Peter J Maughan
8. Michael S Barker
9. Julio V Schneider
10. Russell J Stewart
11. Steffen U Pauls
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes

This article has 2 authors:
1. Romain Feron
2. Robert M Waterhouse
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS

This article has 8 authors:
1. Vivek Sriram
2. Manu Shivakumar
3. Sang-Hyuk Jung
4. Lisa Bang
5. Anurag Verma
6. Seunggeun Lee
7. Eun Kyung Choe
8. Dokyoon Kim
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Oct 27, 2020Latest activity Mar 14, 2022
Fully resolved assembly of Cryptosporidium parvum

This article has 22 authors:
1. Vipin K Menon
2. Pablo C Okhuysen
3. Cynthia L Chappell
4. Medhat Mahmoud
5. Medhat Mahmoud
6. Qingchang Meng
7. Harsha Doddapaneni
8. Vanesa Vee
9. Yi Han
10. Sejal Salvi
11. Sravya Bhamidipati
12. Kavya Kottapalli
13. George Weissenberger
14. Hua Shen
15. Matthew C Ross
16. Kristi L Hoffman
17. Sara Javornik Cregeen
18. Donna M Muzny
19. Ginger A Metcalf
20. Richard A Gibbs
21. Joseph F Petrosino
22. Fritz J Sedlazeck
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022
Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework

This article has 6 authors:
1. Matthias Fahrner
2. Melanie Christine Föll
3. Björn Andreas Grüning
4. Matthias Bernt
5. Hannes Röst
6. Oliver Schilling
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2022Latest activity Mar 14, 2022

Evaluated articles

Loop detection using Hi-C data with HiCExplorer

ChemChaste: Simulating spatially inhomogeneous biochemical reaction–diffusion systems for modeling cell–environment feedbacks

Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae

Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification

Monash DaCRA fPET-fMRI: A dataset for comparison of radiotracer administration for high temporal resolution functional FDG-PET

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Message in a Bottle – Metabarcoding Enables Biodiversity Comparisons Across Ecoregions

Tourmaline: a containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants

A practical tool for maximal information coefficient analysis

Predicting plant biomass accumulation from image-derived parameters

GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar

Triku: a feature selection method based on nearest neighbors for single-cell data

Genome size evolution in the diverse insect order Trichoptera

Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes

NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS

Fully resolved assembly of Cryptosporidium parvum

Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework