Evaluated articles

Showing page 5 of 20 pages of list content

FriendlyClearMap: An optimized toolkit for mouse brain mapping and analysis

This article has 9 authors:
1. Moritz Negwer
2. Bram Bosch
3. Maren Bormann
4. Rick Hesen
5. Lukas Lütje
6. Lynn Aarts
7. Carleen Rossing
8. Nael Nadif Kasri
9. Dirk Schubert
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 18, 2023Latest activity Jun 19, 2023
Strategies and techniques for quality control and semantic enrichment with multimodal data: a case study in colorectal cancer with eHDPrep

This article has 6 authors:
1. Tom M Toner
2. Rashi Pancholi
3. Paul Miller
4. Thorsten Forster
5. Helen G Coleman
6. Ian M Overton
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Jun 19, 2023
A workflow reproducibility scale for automatic validation of biological interpretation results

This article has 4 authors:
1. Hirotaka Suetake
2. Tsukasa Fukusato
3. Takeo Igarashi
4. Tazro Ohta
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Jun 19, 2023
TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors

This article has 15 authors:
1. Markus Hoffmann
2. Nico Trummer
3. Leon Schwartz
4. Jakub Jankowski
5. Hye Kyung Lee
6. Lina-Liv Willruth
7. Olga Lazareva
8. Kevin Yuan
9. Nina Baumgarten
10. Florian Schmidt
11. Jan Baumbach
12. Marcel H. Schulz
13. David B. Blumenthal
14. Lothar Hennighausen
15. Markus List
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Mar 18, 2023Latest activity Jun 19, 2023
An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy

This article has 4 authors:
1. Anup Kumar
2. Gianmauro Cuccuru
3. Björn Grüning
4. Rolf Backofen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity May 2, 2023
DivBrowse – interactive visualization and exploratory data analysis of variant call matrices

This article has 6 authors:
1. Patrick König
2. Sebastian Beier
3. Martin Mascher
4. Nils Stein
5. Matthias Lange
6. Uwe Scholz
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Mar 27, 2023Latest activity May 2, 2023
The Regulatory Mendelian Mutation score for GRCh38

This article has 3 authors:
1. Lusiné Nazaretyan
2. Martin Kircher
3. Max Schubach
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version May 27, 2022Latest activity May 2, 2023
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

This article has 16 authors:
1. Luc Cornet
2. Benoit Durieu
3. Frederik Baert
4. Elizabet D'hooge
5. David Colignon
6. Loic Meunier
7. Valérian Lupo
8. Ilse Cleenwerck
9. Heide-Marie Daniel
10. Leen Rigouts
11. Damien Sirjacobs
12. Stéphane Declerck
13. Peter Vandamme
14. Annick Wilmotte
15. Denis Baurain
16. Pierre Becker
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity May 2, 2023
Contamination detection and microbiome exploration with GRIMER

This article has 2 authors:
1. Vitor C. Piro
2. Bernhard Y. Renard
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 6, 2023Latest activity Apr 10, 2023
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

This article has 16 authors:
1. J. William O. Ballard
2. Matt A. Field
3. Richard J. Edwards
4. Laura A.B. Wilson
5. Loukas G. Koungoulos
6. Benjamin D. Rosen
7. Barry Chernoff
8. Olga Dudchenko
9. Arina Omer
10. Jens Keilwagen
11. Ksenia Skvortsova
12. Ozren Bogdanovic
13. Eva Chan
14. Robert Zammit
15. Vanessa Hayes
16. Erez Lieberman Aiden
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Jan 27, 2023Latest activity Apr 10, 2023
Cell type–specific interpretation of noncoding variants using deep learning–based methods

This article has 9 authors:
1. Maria Sindeeva
2. Nikolay Chekanov
3. Manvel Avetisian
4. Tatiana I Shashkova
5. Nikita Baranov
6. Elian Malkin
7. Alexander Lapin
8. Olga Kardymon
9. Veniamin Fishman
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2023Latest activity Apr 10, 2023
ViReMa : a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids

This article has 7 authors:
1. Stephanea Sotcheff
2. Yiyang Zhou
3. Jason Yeung
4. Yan Sun
5. John E Johnson
6. Bruce E Torbett
7. Andrew L Routh
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2023Latest activity Apr 10, 2023
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

This article has 6 authors:
1. Chen Yang
2. Theodora Lo
3. Ka Ming Nip
4. Saber Hafezqorani
5. René L Warren
6. Inanc Birol
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2023Latest activity Apr 10, 2023
FAIR data station for lightweight metadata management and validation of omics studies

This article has 3 authors:
1. Bart Nijsse
2. Peter J Schaap
3. Jasper J Koehorst
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Apr 10, 2023
3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

This article has 32 authors:
1. Mihaly Varadi
2. Sreenath Nair
3. Ian Sillitoe
4. Gerardo Tauriello
5. Stephen Anyango
6. Stefan Bienert
7. Clemente Borges
8. Mandar Deshpande
9. Tim Green
10. Demis Hassabis
11. Andras Hatos
12. Tamas Hegedus
13. Maarten L Hekkelman
14. Robbie Joosten
15. John Jumper
16. Agata Laydon
17. Dmitry Molodenskiy
18. Damiano Piovesan
19. Edoardo Salladini
20. Steven L. Salzberg
21. Markus J Sommer
22. Martin Steinegger
23. Erzsebet Suhajda
24. Dmitri Svergun
25. Luiggi Tenorio-Ku
26. Silvio Tosatto
27. Kathryn Tunyasuvunakool
28. Andrew Mark Waterhouse
29. Augustin Žídek
30. Torsten Schwede
31. Christine Orengo
32. Sameer Velankar
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 3, 2022Latest activity Mar 24, 2023
Making Common Fund data more findable: Catalyzing a Data Ecosystem

This article has 37 authors:
1. Amanda L Charbonneau
2. Arthur Brady
3. Karl Czajkowski
4. Jain Aluvathingal
5. Saranya Canchi
6. Robert Carter
7. Kyle Chard
8. Daniel J.B. Clarke
9. Heather H Creasy
10. Mike D’Arcy
11. Michelle Giglio
12. Alicia Gingrich
13. Rayna M Harris
14. Theresa K Hodges
15. Olukemi Ifeonu
16. Minji Jeon
17. Eryk Kropiwnicki
18. Marisa C.W. Lim
19. R. Lee Liming
20. Meisha Mandal
21. James B Munro
22. Suvarna Nadendla
23. Rudyard Richter
24. Cia Romano
25. Philippe Rocca-Serra
26. Robert E. Schuler
27. Hongsuda Tangmunarunkit
28. Alex Waldrop
29. Cris Williams
30. Karen Word
31. Susanna-Assunta Sansone
32. Avi Ma’ayan
33. Rick Wagner
34. Ian Foster
35. Carl Kesselman
36. C. Titus Brown
37. Owen White
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 19, 2022Latest activity Mar 24, 2023
Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals

This article has 6 authors:
1. Yunchi Zhu
2. Xin Liao
3. Tingyu Han
4. J.-Y. Chen
5. Chunpeng He
6. Zuhong Lu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 30, 2022Latest activity Mar 24, 2023
What the Phage: A scalable workflow for the identification and analysis of phage sequences

This article has 7 authors:
1. Mike Marquet
2. Martin Hölzer
3. Mathias W. Pletz
4. Adrian Viehweger
5. Oliwia Makarewicz
6. Ralf Ehricht
7. Christian Brandt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 1, 2022Latest activity Mar 24, 2023
Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning

This article has 4 authors:
1. Haiting Chai
2. Quan Gu
3. Joseph Hughes
4. David L. Robertson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 9, 2021Latest activity Mar 24, 2023
Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation

This article has 21 authors:
1. Hu Han
2. Man-Man Yang
3. Jiang Dan
4. Xing-Ju Zhang
5. Qiang Wei
6. Tao Chen
7. Qi-Ju Wang
8. Cheng-Ye Yang
9. Bater Wulan
10. Ting-Ting Zhang
11. Gang Gen
12. Mengkedala
13. Bin Li
14. Wei-Dong Deng
15. Ze-Pu Miao
16. Ran Wang
17. Qing-Feng Zhang
18. Lin Li
19. Sheng-Yu Chao
20. Ming Fang
21. Yong Li
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 6, 2021Latest activity Mar 24, 2023

Evaluated articles

FriendlyClearMap: An optimized toolkit for mouse brain mapping and analysis

Strategies and techniques for quality control and semantic enrichment with multimodal data: a case study in colorectal cancer with eHDPrep

A workflow reproducibility scale for automatic validation of biological interpretation results

TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors

An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy

DivBrowse – interactive visualization and exploratory data analysis of variant call matrices

The Regulatory Mendelian Mutation score for GRCh38

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

Contamination detection and microbiome exploration with GRIMER

The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

Cell type–specific interpretation of noncoding variants using deep learning–based methods

ViReMa : a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

FAIR data station for lightweight metadata management and validation of omics studies

3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Making Common Fund data more findable: Catalyzing a Data Ecosystem

Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals

What the Phage: A scalable workflow for the identification and analysis of phage sequences

Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning

Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation