Evaluated articles

Showing page 14 of 19 pages of list content

Rice Galaxy: an open resource for plant science

This article has 21 authors:
1. Venice Juanillas
2. Alexis Dereeper
3. Nicolas Beaume
4. Gaetan Droc
5. Joshua Dizon
6. John Robert Mendoza
7. Jon Peter Perdon
8. Locedie Mansueto
9. Lindsay Triplett
10. Jillian Lang
11. Gabriel Zhou
12. Kunalan Ratharanjan
13. Beth Plale
14. Jason Haga
15. Jan E Leach
16. Manuel Ruiz
17. Michael Thomson
18. Nickolai Alexandrov
19. Pierre Larmande
20. Tobias Kretzschmar
21. Ramil P Mauleon
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2019Latest activity Jan 23, 2022
A haplotype-resolved draft genome of the European sardine ( Sardina pilchardus )

This article has 8 authors:
1. Bruno Louro
2. Gianluca De Moro
3. Carlos Garcia
4. Cymon J. Cox
5. Ana Veríssimo
6. Stephen J. Sabatino
7. António M. Santos
8. Adelino V. M. Canário
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 5, 2019Latest activity Jan 23, 2022
LION/web: a web-based ontology enrichment tool for lipidomic data analysis

This article has 6 authors:
1. Martijn R Molenaar
2. Aike Jeucken
3. Tsjerk A Wassenaar
4. Chris H A van de Lest
5. Jos F Brouwers
6. J Bernd Helms
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 29, 2019Latest activity Jan 23, 2022
Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

This article has 9 authors:
1. Matthew A Conte
2. Rajesh Joshi
3. Emily C Moore
4. Sri Pratima Nandamuri
5. William J Gammerdinger
6. Reade B Roberts
7. Karen L Carleton
8. Sigbjørn Lien
9. Thomas D Kocher
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
A hybrid de novo assembly of the sea pansy ( Renilla muelleri ) genome

This article has 6 authors:
1. Justin B Jiang
2. Andrea M Quattrini
3. Warren R Francis
4. Joseph F Ryan
5. Estefanía Rodríguez
6. Catherine S McFadden
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
Genome sequence of the corn leaf aphid ( Rhopalosiphum maidis Fitch)

This article has 6 authors:
1. Wenbo Chen
2. Sara Shakir
3. Mahdiyeh Bigham
4. Annett Richter
5. Zhangjun Fei
6. Georg Jander
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks

This article has 6 authors:
1. Ermin Hodzic
2. Raunak Shrestha
3. Kaiyuan Zhu
4. Kuoyuan Cheng
5. Colin C Collins
6. S Cenk Sahinalp
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls

This article has 2 authors:
1. Brent S Pedersen
2. Aaron R Quinlan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

This article has 3 authors:
1. Tazro Ohta
2. Tomoya Tanjo
3. Osamu Ogasawara
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

This article has 2 authors:
1. Ren-Hua Chung
2. Chen-Yu Kang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 26, 2019Latest activity Jan 23, 2022
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

This article has 4 authors:
1. Samuel Lampa
2. Martin Dahlö
3. Jonathan Alvarsson
4. Ola Spjuth
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 26, 2019Latest activity Jan 23, 2022
A critical comparison of technologies for a plant genome sequencing project

This article has 13 authors:
1. Pirita Paajanen
2. George Kettleborough
3. Elena López-Girona
4. Michael Giolai
5. Darren Heavens
6. David Baker
7. Ashleigh Lister
8. Fiorella Cugliandolo
9. Gail Wilde
10. Ingo Hein
11. Iain Macaulay
12. Glenn J Bryan
13. Matthew D Clark
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 9, 2019Latest activity Jan 23, 2022
Comparative Genomics and Genome Evolution in birds-of-paradise

This article has 12 authors:
1. Stefan Prost
2. Ellie E. Armstrong
3. Johan Nylander
4. Gregg W.C. Thomas
5. Alexander Suh
6. Bent Petersen
7. Love Dalen
8. Brett Benz
9. Mozes P.K. Blom
10. Eleftheria Palkopoulou
11. Per G. P. Ericson
12. Martin Irestedt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 16, 2018Latest activity Jan 23, 2022
Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

This article has 10 authors:
1. Laura-Jayne Gardiner
2. Thomas Brabbs
3. Alina Akhunov
4. Katherine Jordan
5. Hikmet Budak
6. Todd Richmond
7. Sukhwinder Singh
8. Leah Catchpole
9. Eduard Akhunov
10. Anthony Hall
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

This article has 5 authors:
1. Dimitrios Voukantsis
2. Kenneth Kahn
3. Martin Hadley
4. Rowan Wilson
5. Francesca M. Buffa
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 16, 2019Latest activity Jan 23, 2022
CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

This article has 6 authors:
1. Daniel Reynolds
2. Joshua Ball
3. Alan Bauer
4. Robert Davey
5. Simon Griffiths
6. Ji Zhou
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

This article has 13 authors:
1. Ye Peng
2. Shanmei Tang
3. Dan Wang
4. Huanzi Zhong
5. Huijue Jia
6. Xianghang Cai
7. Zhaoxi Zhang
8. Minfeng Xiao
9. Huanming Yang
10. Jian Wang
11. Karsten Kristiansen
12. Xun Xu
13. Junhua Li
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
PiGx: reproducible genomics analysis pipelines with GNU Guix

This article has 8 authors:
1. Ricardo Wurmus
2. Bora Uyar
3. Brendan Osberg
4. Vedran Franke
5. Alexander Gosdschan
6. Katarzyna Wreczycka
7. Jonathan Ronen
8. Altuna Akalin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

This article has 11 authors:
1. Ellie E. Armstrong
2. Ryan W. Taylor
3. Stefan Prost
4. Peter Blinston
5. Esther van der Meer
6. Hillary Madzikanda
7. Olivia Mufute
8. Roseline Mandisodza
9. John Stuelpnagel
10. Claudio Sillero-Zubiri
11. Dmitri Petrov
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 27, 2017Latest activity Jan 22, 2022
Aequatus: An open-source homology browser

This article has 5 authors:
1. Anil S. Thanki
2. Nicola Soranzo
3. Javier Herrero
4. Wilfried Haerty
5. Robert P. Davey
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 15, 2018Latest activity Jan 22, 2022

Evaluated articles

Rice Galaxy: an open resource for plant science

A haplotype-resolved draft genome of the European sardine ( Sardina pilchardus )

LION/web: a web-based ontology enrichment tool for lipidomic data analysis

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

A hybrid de novo assembly of the sea pansy ( Renilla muelleri ) genome

Genome sequence of the corn leaf aphid ( Rhopalosiphum maidis Fitch)

Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks

Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

A critical comparison of technologies for a plant genome sequencing project

Comparative Genomics and Genome Evolution in birds-of-paradise

Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

PiGx: reproducible genomics analysis pipelines with GNU Guix

Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

Aequatus: An open-source homology browser