Evaluated articles

Showing page 14 of 23 pages of list content

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

This article has 4 authors:
1. Satria A Kautsar
2. Justin J J van der Hooft
3. Dick de Ridder
4. Marnix H Medema
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2021Latest activity Jan 24, 2022
Genome diversity in Ukraine

This article has 30 authors:
1. Taras K Oleksyk
2. Walter W Wolfsberger
3. Alexandra M Weber
4. Khrystyna Shchubelka
5. Olga T Oleksyk
6. Olga Levchuk
7. Alla Patrus
8. Nelya Lazar
9. Stephanie O Castro-Marquez
10. Yaroslava Hasynets
11. Patricia Boldyzhar
12. Mikhailo Neymet
13. Alina Urbanovych
14. Viktoriya Stakhovska
15. Kateryna Malyar
16. Svitlana Chervyakova
17. Olena Podoroha
18. Natalia Kovalchuk
19. Juan L Rodriguez-Flores
20. Weichen Zhou
21. Sarah Medley
22. Fabia Battistuzzi
23. Ryan Liu
24. Yong Hou
25. Siru Chen
26. Huanming Yang
27. Meredith Yeager
28. Michael Dean
29. Ryan E Mills
30. Volodymyr Smolanka
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2021Latest activity Jan 24, 2022
Tool recommender system in Galaxy using deep learning

This article has 4 authors:
1. Anup Kumar
2. Helena Rasche
3. Björn Grüning
4. Rolf Backofen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2021Latest activity Jan 24, 2022
SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

This article has 2 authors:
1. Matthew D Young
2. Sam Behjati
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2020Latest activity Jan 24, 2022
Long-read assembly of the Brassica napus reference genome Darmor-bzh

This article has 20 authors:
1. Mathieu Rousseau-Gueutin
2. Caroline Belser
3. Corinne Da Silva
4. Gautier Richard
5. Benjamin Istace
6. Corinne Cruaud
7. Cyril Falentin
8. Franz Boideau
9. Julien Boutte
10. Regine Delourme
11. Gwenaëlle Deniot
12. Stefan Engelen
13. Julie Ferreira de Carvalho
14. Arnaud Lemainque
15. Loeiz Maillet
16. Jérôme Morice
17. Patrick Wincker
18. France Denoeud
19. Anne-Marie Chèvre
20. Jean-Marc Aury
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2020Latest activity Jan 24, 2022
Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

This article has 14 authors:
1. Dandan Lang
2. Shilai Zhang
3. Pingping Ren
4. Fan Liang
5. Zongyi Sun
6. Guanliang Meng
7. Yuntao Tan
8. Xiaokang Li
9. Qihua Lai
10. Lingling Han
11. Depeng Wang
12. Fengyi Hu
13. Wen Wang
14. Shanlin Liu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2020Latest activity Jan 24, 2022
DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data

This article has 3 authors:
1. Lukas M Simon
2. Fangfang Yan
3. Zhongming Zhao
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2020Latest activity Jan 24, 2022
iGenomics: Comprehensive DNA sequence analysis on your Smartphone

This article has 4 authors:
1. Aspyn Palatnick
2. Bin Zhou
3. Elodie Ghedin
4. Michael C Schatz
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2020Latest activity Jan 24, 2022
Accurate assembly of the olive baboon ( Papio anubis ) genome using long-read and Hi-C data

This article has 11 authors:
1. Sanjit Singh Batra
2. Michal Levy-Sakin
3. Jacqueline Robinson
4. Joseph Guillory
5. Steffen Durinck
6. Tauras P Vilgalys
7. Pui-Yan Kwok
8. Laura A Cox
9. Somasekar Seshagiri
10. Yun S Song
11. Jeffrey D Wall
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2020Latest activity Jan 24, 2022
Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

This article has 3 authors:
1. Christina Weißbecker
2. Beatrix Schnabel
3. Anna Heintz-Buschart
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 30, 2020Latest activity Jan 24, 2022
GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets

This article has 9 authors:
1. Miroslav Kratochvíl
2. Oliver Hunewald
3. Laurent Heirendt
4. Vasco Verissimo
5. Jiří Vondrášek
6. Venkata P Satagopam
7. Reinhard Schneider
8. Christophe Trefois
9. Markus Ollert
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2020Latest activity Jan 24, 2022
Correcting for experiment-specific variability in expression compendia can remove underlying signals

This article has 5 authors:
1. Alexandra J Lee
2. YoSon Park
3. Georgia Doing
4. Deborah A Hogan
5. Casey S Greene
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2020Latest activity Jan 24, 2022
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

This article has 23 authors:
1. Mehmet Tekman
2. Bérénice Batut
3. Alexander Ostrovsky
4. Christophe Antoniewski
5. Dave Clements
6. Fidel Ramirez
7. Graham J Etherington
8. Hans-Rudolf Hotz
9. Jelle Scholtalbers
10. Jonathan R Manning
11. Lea Bellenger
12. Maria A Doyle
13. Mohammad Heydarian
14. Ni Huang
15. Nicola Soranzo
16. Pablo Moreno
17. Stefan Mautner
18. Irene Papatheodorou
19. Anton Nekrutenko
20. James Taylor
21. Daniel Blankenberg
22. Rolf Backofen
23. Björn Grüning
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2020Latest activity Jan 24, 2022
A map of tumor–host interactions in glioma at single-cell resolution

This article has 16 authors:
1. Francesca Pia Caruso
2. Luciano Garofano
3. Fulvio D'Angelo
4. Kai Yu
5. Fuchou Tang
6. Jinzhou Yuan
7. Jing Zhang
8. Luigi Cerulo
9. Stefano M Pagnotta
10. Davide Bedognetti
11. Peter A Sims
12. Mario Suvà
13. Xiao-Dong Su
14. Anna Lasorella
15. Antonio Iavarone
16. Michele Ceccarelli
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2020Latest activity Jan 24, 2022
Gene-set Enrichment with Mathematical Biology (GEMB)

This article has 5 authors:
1. Amy L Cochran
2. Kenneth J Nieser
3. Daniel B Forger
4. Sebastian Zöllner
5. Melvin G McInnis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2020Latest activity Jan 24, 2022
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

This article has 6 authors:
1. Damien Courtine
2. Jan Provaznik
3. Jerome Reboul
4. Guillaume Blanc
5. Vladimir Benes
6. Jonathan J Ewbank
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2020Latest activity Jan 24, 2022
A haplotype-resolved, de novo genome assembly for the wood tiger moth ( Arctia plantaginis ) through trio binning

This article has 11 authors:
1. Eugenie C Yen
2. Shane A McCarthy
3. Juan A Galarza
4. Tomas N Generalovic
5. Sarah Pelan
6. Petr Nguyen
7. Joana I Meier
8. Ian A Warren
9. Johanna Mappes
10. Richard Durbin
11. Chris D Jiggins
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2020Latest activity Jan 24, 2022
Scientometric trends for coronaviruses and other emerging viral infections

This article has 3 authors:
1. Dima Kagan
2. Jacob Moran-Gilad
3. Michael Fire
Reviewed by GigaScience, ScreenIT

This article has 2 evaluationsAppears in 2 listsLatest version Aug 1, 2020Latest activity Jan 24, 2022
Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

This article has 5 authors:
1. Xiang Zhou
2. Hua Chai
3. Huiying Zhao
4. Ching-Hsing Luo
5. Yuedong Yang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2020Latest activity Jan 24, 2022
Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

This article has 4 authors:
1. Kirill Kryukov
2. Mahoko Takahashi Ueda
3. So Nakagawa
4. Tadashi Imanishi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2020Latest activity Jan 24, 2022

Evaluated articles

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Genome diversity in Ukraine

Tool recommender system in Galaxy using deep learning

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

Long-read assembly of the Brassica napus reference genome Darmor-bzh

Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data

iGenomics: Comprehensive DNA sequence analysis on your Smartphone

Accurate assembly of the olive baboon ( Papio anubis ) genome using long-read and Hi-C data

Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets

Correcting for experiment-specific variability in expression compendia can remove underlying signals

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

A map of tumor–host interactions in glioma at single-cell resolution

Gene-set Enrichment with Mathematical Biology (GEMB)

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

A haplotype-resolved, de novo genome assembly for the wood tiger moth ( Arctia plantaginis ) through trio binning

Scientometric trends for coronaviruses and other emerging viral infections

Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences