Evaluated articles

Showing page 14 of 19 pages of list content

Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls

This article has 2 authors:
1. Brent S Pedersen
2. Aaron R Quinlan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

This article has 3 authors:
1. Tazro Ohta
2. Tomoya Tanjo
3. Osamu Ogasawara
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2019Latest activity Jan 23, 2022
A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

This article has 2 authors:
1. Ren-Hua Chung
2. Chen-Yu Kang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 26, 2019Latest activity Jan 23, 2022
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

This article has 4 authors:
1. Samuel Lampa
2. Martin Dahlö
3. Jonathan Alvarsson
4. Ola Spjuth
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 26, 2019Latest activity Jan 23, 2022
A critical comparison of technologies for a plant genome sequencing project

This article has 13 authors:
1. Pirita Paajanen
2. George Kettleborough
3. Elena López-Girona
4. Michael Giolai
5. Darren Heavens
6. David Baker
7. Ashleigh Lister
8. Fiorella Cugliandolo
9. Gail Wilde
10. Ingo Hein
11. Iain Macaulay
12. Glenn J Bryan
13. Matthew D Clark
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 9, 2019Latest activity Jan 23, 2022
Comparative Genomics and Genome Evolution in birds-of-paradise

This article has 12 authors:
1. Stefan Prost
2. Ellie E. Armstrong
3. Johan Nylander
4. Gregg W.C. Thomas
5. Alexander Suh
6. Bent Petersen
7. Love Dalen
8. Brett Benz
9. Mozes P.K. Blom
10. Eleftheria Palkopoulou
11. Per G. P. Ericson
12. Martin Irestedt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 16, 2018Latest activity Jan 23, 2022
Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

This article has 10 authors:
1. Laura-Jayne Gardiner
2. Thomas Brabbs
3. Alina Akhunov
4. Katherine Jordan
5. Hikmet Budak
6. Todd Richmond
7. Sukhwinder Singh
8. Leah Catchpole
9. Eduard Akhunov
10. Anthony Hall
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

This article has 5 authors:
1. Dimitrios Voukantsis
2. Kenneth Kahn
3. Martin Hadley
4. Rowan Wilson
5. Francesca M. Buffa
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 16, 2019Latest activity Jan 23, 2022
CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

This article has 6 authors:
1. Daniel Reynolds
2. Joshua Ball
3. Alan Bauer
4. Robert Davey
5. Simon Griffiths
6. Ji Zhou
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

This article has 13 authors:
1. Ye Peng
2. Shanmei Tang
3. Dan Wang
4. Huanzi Zhong
5. Huijue Jia
6. Xianghang Cai
7. Zhaoxi Zhang
8. Minfeng Xiao
9. Huanming Yang
10. Jian Wang
11. Karsten Kristiansen
12. Xun Xu
13. Junhua Li
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
PiGx: reproducible genomics analysis pipelines with GNU Guix

This article has 8 authors:
1. Ricardo Wurmus
2. Bora Uyar
3. Brendan Osberg
4. Vedran Franke
5. Alexander Gosdschan
6. Katarzyna Wreczycka
7. Jonathan Ronen
8. Altuna Akalin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

This article has 11 authors:
1. Ellie E. Armstrong
2. Ryan W. Taylor
3. Stefan Prost
4. Peter Blinston
5. Esther van der Meer
6. Hillary Madzikanda
7. Olivia Mufute
8. Roseline Mandisodza
9. John Stuelpnagel
10. Claudio Sillero-Zubiri
11. Dmitri Petrov
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 27, 2017Latest activity Jan 22, 2022
Aequatus: An open-source homology browser

This article has 5 authors:
1. Anil S. Thanki
2. Nicola Soranzo
3. Javier Herrero
4. Wilfried Haerty
5. Robert P. Davey
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 15, 2018Latest activity Jan 22, 2022
NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

This article has 10 authors:
1. A Chaliotis
2. P Vlastaridis
3. C Ntountoumi
4. M Botou
5. V Yalelis
6. P Lazou
7. E Tatsaki
8. D Mossialos
9. S Frillingos
10. G D Amoutzias
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 10, 2018Latest activity Jan 22, 2022
Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism

This article has 10 authors:
1. Xiaofeng Dong
2. Kittipong Chaisiri
3. Dong Xia
4. Stuart D Armstrong
5. Yongxiang Fang
6. Martin J Donnelly
7. Tatsuhiko Kadowaki
8. John W McGarry
9. Alistair C Darby
10. Benjamin L Makepeace
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 15, 2018Latest activity Jan 22, 2022
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

This article has 3 authors:
1. Szymon T Calus
2. Umer Z Ijaz
3. Ameet J Pinto
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 23, 2018Latest activity Jan 22, 2022
SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow ( Hirundo rustica rustica )

This article has 9 authors:
1. Giulio Formenti
2. Matteo Chiara
3. Lucy Poveda
4. Kees-Jan Francoijs
5. Andrea Bonisoli-Alquati
6. Luca Canova
7. Luca Gianfranceschi
8. David Stephen Horner
9. Nicola Saino
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 29, 2018Latest activity Jan 22, 2022
Network based conditional genome wide association analysis of human metabolomics

This article has 11 authors:
1. Y. A. Tsepilov
2. S. Zh. Sharapov
3. O. O. Zaytseva
4. J. Krumsek
5. C. Prehn
6. J. Adamski
7. G. Kastenmüller
8. R. Wang-Sattler
9. K. Strauch
10. C. Gieger
11. Y. S. Aulchenko
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 27, 2016Latest activity Jan 22, 2022
A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

This article has 9 authors:
1. Angelica da Silva Lantyer
2. Niccolò Calcini
3. Ate Bijlsma
4. Koen Kole
5. Melanie Emmelkamp
6. Manon Peeters
7. Wim J J Scheenen
8. Fleur Zeldenrust
9. Tansu Celikel
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2018Latest activity Jan 22, 2022
Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

This article has 6 authors:
1. Chris-Andre Leimeister
2. Jendrik Schellhorn
3. Svenja Dörrer
4. Michael Gerth
5. Christoph Bleidorn
6. Burkhard Morgenstern
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 7, 2018Latest activity Jan 22, 2022

Evaluated articles

Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

A critical comparison of technologies for a plant genome sequencing project

Comparative Genomics and Genome Evolution in birds-of-paradise

Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

PiGx: reproducible genomics analysis pipelines with GNU Guix

Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

Aequatus: An open-source homology browser

NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow ( Hirundo rustica rustica )

Network based conditional genome wide association analysis of human metabolomics

A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences