Evaluated articles

Showing page 13 of 19 pages of list content

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

This article has 10 authors:
1. Stephen J Bush
2. Dona Foster
3. David W Eyre
4. Emily L Clark
5. Nicola De Maio
6. Liam P Shaw
7. Nicole Stoesser
8. Tim E A Peto
9. Derrick W Crook
10. A Sarah Walker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

This article has 7 authors:
1. Miranda E Pitt
2. Son H Nguyen
3. Tânia P S Duarte
4. Haotian Teng
5. Mark A T Blaskovich
6. Matthew A Cooper
7. Lachlan J M Coin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

This article has 6 authors:
1. Mitsutaka Kadota
2. Osamu Nishimura
3. Hisashi Miura
4. Kaori Tanaka
5. Ichiro Hiratani
6. Shigehiro Kuraku
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2020Latest activity Jan 23, 2022
The draft nuclear genome assembly of Eucalyptus pauciflora : a pipeline for comparing de novo assemblies

This article has 7 authors:
1. Weiwen Wang
2. Ashutosh Das
3. David Kainer
4. Miriam Schalamun
5. Alejandro Morales-Suarez
6. Benjamin Schwessinger
7. Robert Lanfear
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2020Latest activity Jan 23, 2022
Assessment of human diploid genome assembly with 10x Linked-Reads data

This article has 4 authors:
1. Lu Zhang
2. Xin Zhou
3. Ziming Weng
4. Arend Sidow
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022
High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

This article has 6 authors:
1. Xu Wang
2. Hong Xuan
3. Byron Evers
4. Sandesh Shrestha
5. Robert Pless
6. Jesse Poland
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 23, 2019Latest activity Jan 23, 2022
RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements

This article has 3 authors:
1. Ekaterina Osipova
2. Nikolai Hecker
3. Michael Hiller
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022
Trochodendron aralioides , the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research

This article has 4 authors:
1. Joeri S Strijk
2. Damien D Hinsinger
3. Fengping Zhang
4. Kunfang Cao
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

This article has 6 authors:
1. Robail Yasrab
2. Jonathan A Atkinson
3. Darren M Wells
4. Andrew P French
5. Tony P Pridmore
6. Michael P Pound
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022
Evaluation of computational genotyping of structural variation for clinical diagnoses

This article has 3 authors:
1. Varuna Chander
2. Richard A Gibbs
3. Fritz J Sedlazeck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 23, 2022
ascend : R package for analysis of single-cell RNA-seq data

This article has 7 authors:
1. Anne Senabouth
2. Samuel W Lukowski
3. Jose Alquicira Hernandez
4. Stacey B Andersen
5. Xin Mei
6. Quan H Nguyen
7. Joseph E Powell
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 1, 2019Latest activity Jan 31, 2022
Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data

This article has 8 authors:
1. Timothy H Webster
2. Madeline Couse
3. Bruno M Grande
4. Eric Karlins
5. Tanya N Phung
6. Phillip A Richmond
7. Whitney Whitford
8. Melissa A Wilson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2019Latest activity Jan 23, 2022
CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language

This article has 3 authors:
1. Michael Kotliar
2. Andrey V Kartashov
3. Artem Barski
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2019Latest activity Jan 23, 2022
A chromosome-scale assembly of the major African malaria vector Anopheles funestus

This article has 7 authors:
1. Jay Ghurye
2. Sergey Koren
3. Scott T Small
4. Seth Redmond
5. Paul Howell
6. Adam M Phillippy
7. Nora J Besansky
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2019Latest activity Jan 23, 2022
GenPipes: an open-source framework for distributed and scalable genomic analyses

This article has 23 authors:
1. Mathieu Bourgey
2. Rola Dali
3. Robert Eveleigh
4. Kuang Chung Chen
5. Louis Letourneau
6. Joel Fillon
7. Marc Michaud
8. Maxime Caron
9. Johanna Sandoval
10. Francois Lefebvre
11. Gary Leveque
12. Eloi Mercier
13. David Bujold
14. Pascale Marquis
15. Patrick Tran Van
16. David Anderson de Lima Morais
17. Julien Tremblay
18. Xiaojian Shao
19. Edouard Henrion
20. Emmanuel Gonzalez
21. Pierre-Olivier Quirion
22. Bryan Caron
23. Guillaume Bourque
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2019Latest activity Jan 23, 2022
TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer

This article has 3 authors:
1. Amartya Singh
2. Gyan Bhanot
3. Hossein Khiabanian
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2019Latest activity Jan 23, 2022
A collection of yeast cellular electron cryotomography data

This article has 4 authors:
1. Lu Gan
2. Cai Tong Ng
3. Chen Chen
4. Shujun Cai
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2019Latest activity Jan 23, 2022
Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood

This article has 23 authors:
1. Yi Zhao
2. Xiao Li
3. Weihua Zhao
4. Jingwan Wang
5. Jiawei Yu
6. Ziyun Wan
7. Kai Gao
8. Gang Yi
9. Xie Wang
10. Bingbing Fan
11. Qinkai Wu
12. Bangwei Chen
13. Feng Xie
14. Jinghua Wu
15. Wei Zhang
16. Fang Chen
17. Huanming Yang
18. Jian Wang
19. Xun Xu
20. Bin Li
21. Shiping Liu
22. Yong Hou
23. Xiao Liu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2019Latest activity Jan 23, 2022
A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia

This article has 9 authors:
1. Angela Tam
2. Christian Dansereau
3. Yasser Iturria-Medina
4. Sebastian Urchs
5. Pierre Orban
6. Hanad Sharmarke
7. John Breitner
8. Pierre Bellec
9. Alzheimer's Disease Neuroimaging Initiative
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2019Latest activity Jan 23, 2022
Ultra-deep, long-read nanopore sequencing of mock microbial community standards

This article has 4 authors:
1. Samuel M Nicholls
2. Joshua C Quick
3. Shuiquan Tang
4. Nicholas J Loman
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2019Latest activity Jan 23, 2022

Evaluated articles

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

The draft nuclear genome assembly of Eucalyptus pauciflora : a pipeline for comparing de novo assemblies

Assessment of human diploid genome assembly with 10x Linked-Reads data

High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements

Trochodendron aralioides , the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research

RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

Evaluation of computational genotyping of structural variation for clinical diagnoses

ascend : R package for analysis of single-cell RNA-seq data

Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data

CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

GenPipes: an open-source framework for distributed and scalable genomic analyses

TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer

A collection of yeast cellular electron cryotomography data

Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood

A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia

Ultra-deep, long-read nanopore sequencing of mock microbial community standards