Evaluated articles

Showing page 13 of 20 pages of list content

parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

This article has 11 authors:
1. Alessandro Petrini
2. Marco Mesiti
3. Max Schubach
4. Marco Frasca
5. Daniel Danis
6. Matteo Re
7. Giuliano Grossi
8. Luca Cappelletti
9. Tiziana Castrignanò
10. Peter N Robinson
11. Giorgio Valentini
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
High-quality chromosome-scale assembly of the walnut ( Juglans regia L.) reference genome

This article has 16 authors:
1. Annarita Marrano
2. Monica Britton
3. Paulo A Zaini
4. Aleksey V Zimin
5. Rachael E Workman
6. Daniela Puiu
7. Luca Bianco
8. Erica Adele Di Pierro
9. Brian J Allen
10. Sandeep Chakraborty
11. Michela Troggio
12. Charles A Leslie
13. Winston Timp
14. Abhaya Dandekar
15. Steven L Salzberg
16. David B Neale
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

This article has 4 authors:
1. Morteza Hosseini
2. Diogo Pratas
3. Burkhard Morgenstern
4. Armando J Pinho
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

This article has 6 authors:
1. Katarzyna Murat
2. Björn Grüning
3. Paulina Wiktoria Poterlowicz
4. Gillian Westgate
5. Desmond J Tobin
6. Krzysztof Poterlowicz
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 19, 2019Latest activity Jan 24, 2022
Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal

This article has 10 authors:
1. Graham J Etherington
2. Darren Heavens
3. David Baker
4. Ashleigh Lister
5. Rose McNelly
6. Gonzalo Garcia
7. Bernardo Clavijo
8. Iain Macaulay
9. Wilfried Haerty
10. Federica Di Palma
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
Community standards for open cell migration data

This article has 25 authors:
1. Alejandra N Gonzalez-Beltran
2. Paola Masuzzo
3. Christophe Ampe
4. Gert-Jan Bakker
5. Sébastien Besson
6. Robert H Eibl
7. Peter Friedl
8. Matthias Gunzer
9. Mark Kittisopikul
10. Sylvia E Le Dévédec
11. Simone Leo
12. Josh Moore
13. Yael Paran
14. Jaime Prilusky
15. Philippe Rocca-Serra
16. Philippe Roudot
17. Marc Schuster
18. Gwendolien Sergeant
19. Staffan Strömblad
20. Jason R Swedlow
21. Merijn van Erp
22. Marleen Van Troys
23. Assaf Zaritsky
24. Susanna-Assunta Sansone
25. Lennart Martens
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

This article has 5 authors:
1. Rafael R C Cuadrat
2. Maria Sorokina
3. Bruno G Andrade
4. Tobias Goris
5. Alberto M R Dávila
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
The gene-rich genome of the scallop Pecten maximus

This article has 21 authors:
1. Nathan J Kenny
2. Shane A McCarthy
3. Olga Dudchenko
4. Katherine James
5. Emma Betteridge
6. Craig Corton
7. Jale Dolucan
8. Dan Mead
9. Karen Oliver
10. Arina D Omer
11. Sarah Pelan
12. Yan Ryan
13. Ying Sims
14. Jason Skelton
15. Michelle Smith
16. James Torrance
17. David Weisz
18. Anil Wipat
19. Erez L Aiden
20. Kerstin Howe
21. Suzanne T Williams
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 30, 2020Latest activity Jan 24, 2022
Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

This article has 7 authors:
1. Mitchell J Feldmann
2. Michael A Hardigan
3. Randi A Famula
4. Cindy M López
5. Amy Tabb
6. Glenn S Cole
7. Steven J Knapp
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 30, 2020Latest activity Jan 24, 2022
Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

This article has 2 authors:
1. Karl A Johnson
2. Guy M Hagen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2020Latest activity Jan 23, 2022
Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

This article has 7 authors:
1. Marco Antonio Tangaro
2. Giacinto Donvito
3. Marica Antonacci
4. Matteo Chiara
5. Pietro Mandreoli
6. Graziano Pesole
7. Federico Zambelli
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2020Latest activity Jan 23, 2022
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

This article has 4 authors:
1. Stephen R Piccolo
2. Terry J Lee
3. Erica Suh
4. Kimball Hill
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2020Latest activity Jan 23, 2022
Binning unassembled short reads based on k -mer abundance covariance using sparse coding

This article has 5 authors:
1. Olexiy Kyrgyzov
2. Vincent Prost
3. Stéphane Gazut
4. Bruno Farcy
5. Thomas Brüls
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 29, 2020Latest activity Jan 23, 2022
Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

This article has 7 authors:
1. Thomas McGowan
2. James E Johnson
3. Praveen Kumar
4. Ray Sajulga
5. Subina Mehta
6. Pratik D Jagtap
7. Timothy J Griffin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 28, 2020Latest activity Jan 23, 2022
Interpretable and accurate prediction models for metagenomics data

This article has 7 authors:
1. Edi Prifti
2. Yann Chevaleyre
3. Blaise Hanczar
4. Eugeni Belda
5. Antoine Danchin
6. Karine Clément
7. Jean-Daniel Zucker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 1, 2020Latest activity Jan 23, 2022
GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

This article has 5 authors:
1. Ekaterina Noskova
2. Vladimir Ulyantsev
3. Klaus-Peter Koepfli
4. Stephen J O'Brien
5. Pavel Dobrynin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 29, 2020Latest activity Jan 23, 2022
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

This article has 2 authors:
1. Zheng Li
2. Michael S Barker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

This article has 14 authors:
1. Jerven Bolleman
2. Edouard de Castro
3. Delphine Baratin
4. Sebastien Gehant
5. Beatrice A Cuche
6. Andrea H Auchincloss
7. Elisabeth Coudert
8. Chantal Hulo
9. Patrick Masson
10. Ivo Pedruzzi
11. Catherine Rivoire
12. Ioannis Xenarios
13. Nicole Redaschi
14. Alan Bridge
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
The Data Tags Suite (DATS) model for discovering data access and use requirements

This article has 4 authors:
1. George Alter
2. Alejandra Gonzalez-Beltran
3. Lucila Ohno-Machado
4. Philippe Rocca-Serra
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

This article has 10 authors:
1. Stephen J Bush
2. Dona Foster
3. David W Eyre
4. Emily L Clark
5. Nicola De Maio
6. Liam P Shaw
7. Nicole Stoesser
8. Tim E A Peto
9. Derrick W Crook
10. A Sarah Walker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022

Evaluated articles

parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

High-quality chromosome-scale assembly of the walnut ( Juglans regia L.) reference genome

Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal

Community standards for open cell migration data

Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

The gene-rich genome of the scallop Pecten maximus

Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

Binning unassembled short reads based on k -mer abundance covariance using sparse coding

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

Interpretable and accurate prediction models for metagenomics data

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

The Data Tags Suite (DATS) model for discovering data access and use requirements

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines