Evaluated articles

Showing page 12 of 23 pages of list content

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads

This article has 2 authors:
1. Fan Zhang
2. Hyun Min Kang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 29, 2021Latest activity Feb 6, 2022
CAMITAX: Taxon labels for microbial genomes

This article has 3 authors:
1. Andreas Bremges
2. Adrian Fritz
3. Alice C McHardy
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2020Latest activity Feb 10, 2022
IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

This article has 8 authors:
1. Yun-Ching Chen
2. Abhilash Suresh
3. Chingiz Underbayev
4. Clare Sun
5. Komudi Singh
6. Fayaz Seifuddin
7. Adrian Wiestner
8. Mehdi Pirooznia
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Feb 6, 2022
SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier

This article has 2 authors:
1. Xiao Hu
2. Iddo Friedberg
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Feb 6, 2022
Citation needed? Wikipedia bibliometrics during the first wave of the COVID-19 pandemic

This article has 3 authors:
1. Omer Benjakob
2. Rona Aviram
3. Jonathan Aryeh Sobel
Reviewed by GigaScience, preLights, ScreenIT

This article has 5 evaluationsAppears in 4 listsLatest version Jan 1, 2022Latest activity Feb 2, 2022
The intersectional genetics landscape for humans

This article has 2 authors:
1. Andre Macedo
2. Alisson M Gontijo
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2020Latest activity Jan 31, 2022
Refgenie: a reference genome resource manager

This article has 5 authors:
1. Michał Stolarczyk
2. Vincent P Reuter
3. Jason P Smith
4. Neal E Magee
5. Nathan C Sheffield
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 29, 2020Latest activity Jan 31, 2022
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

This article has 29 authors:
1. Bo Song
2. Yue Song
3. Yuan Fu
4. Elizabeth Balyejusa Kizito
5. Sandra Ndagire Kamenya
6. Pamela Nahamya Kabod
7. Huan Liu
8. Samuel Muthemba
9. Robert Kariba
10. Joyce Njuguna
11. Solomon Maina
12. Francesca Stomeo
13. Appolinaire Djikeng
14. Prasad S Hendre
15. Xiaoli Chen
16. Wenbin Chen
17. Xiuli Li
18. Wenjing Sun
19. Sibo Wang
20. Shifeng Cheng
21. Alice Muchugi
22. Ramni Jamnadass
23. Howard-Yana Shapiro
24. Allen Van Deynze
25. Huanming Yang
26. Jian Wang
27. Xun Xu
28. Damaris Achieng Odeny
29. Xin Liu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Jan 31, 2022
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

This article has 5 authors:
1. Sion C Bayliss
2. Harry A Thorpe
3. Nicola M Coyle
4. Samuel K Sheppard
5. Edward J Feil
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Jan 31, 2022
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

This article has 4 authors:
1. Elena Bushmanova
2. Dmitry Antipov
3. Alla Lapidus
4. Andrey D Prjibelski
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
rCASC: reproducible classification analysis of single-cell sequencing data

This article has 11 authors:
1. Luca Alessandrì
2. Francesca Cordero
3. Marco Beccuti
4. Maddalena Arigoni
5. Martina Olivero
6. Greta Romano
7. Sergio Rabellino
8. Nicola Licheri
9. Gennaro De Libero
10. Luigia Pace
11. Raffaele A Calogero
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
Evaluating stably expressed genes in single cells

This article has 9 authors:
1. Yingxin Lin
2. Shila Ghazanfar
3. Dario Strbenac
4. Andy Wang
5. Ellis Patrick
6. David M Lin
7. Terence Speed
8. Jean Y H Yang
9. Pengyi Yang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
A field guide for the compositional analysis of any-omics data

This article has 6 authors:
1. Thomas P Quinn
2. Ionas Erb
3. Greg Gloor
4. Cedric Notredame
5. Mark F Richardson
6. Tamsyn M Crowley
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

This article has 4 authors:
1. Marek Wiewiórka
2. Agnieszka Szmurło
3. Wiktor Kuśmirek
4. Tomasz Gambin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2019Latest activity Jan 31, 2022
Machado: Open source genomics data integration framework

This article has 2 authors:
1. Mauricio de Alvarenga Mudadu
2. Adhemar Zerlotini
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2020Latest activity Jan 31, 2022
Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli

This article has 4 authors:
1. David R Greig
2. Claire Jenkins
3. Saheer Gharbia
4. Timothy J Dallman
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2019Latest activity Jan 31, 2022
VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock

This article has 4 authors:
1. Sara Silva Pereira
2. John Heap
3. Andrew R Jones
4. Andrew P Jackson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 29, 2019Latest activity Jan 31, 2022
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies

This article has 6 authors:
1. Jonathan A. Atkinson
2. Guillaume Lobet
3. Manuel Noll
4. Patrick E. Meyer
5. Marcus Griffiths
6. Darren M. Wells
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 23, 2017Latest activity Jan 31, 2022
Parallel sequencing lives, or what makes large sequencing projects successful

This article has 10 authors:
1. Javier Quilez
2. Enrique Vidal
3. François Le Dily
4. François Serra
5. Yasmina Cuartero
6. Ralph Stadhouders
7. Thomas Graf
8. Marc A Marti-Renom
9. Miguel Beato
10. Guillaume Filion
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 18, 2017Latest activity Jan 31, 2022
Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade

This article has 2 authors:
1. Daniel H. Chitwood
2. Wagner C. Otoni
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2017Latest activity Jan 26, 2022

Evaluated articles

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads

CAMITAX: Taxon labels for microbial genomes

IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier

Citation needed? Wikipedia bibliometrics during the first wave of the COVID-19 pandemic

The intersectional genetics landscape for humans

Refgenie: a reference genome resource manager

Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

rCASC: reproducible classification analysis of single-cell sequencing data

Evaluating stably expressed genes in single cells

A field guide for the compositional analysis of any-omics data

SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

Machado: Open source genomics data integration framework

Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli

VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies

Parallel sequencing lives, or what makes large sequencing projects successful

Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade