Evaluated articles

Showing page 11 of 21 pages of list content

Refgenie: a reference genome resource manager

This article has 5 authors:
1. Michał Stolarczyk
2. Vincent P Reuter
3. Jason P Smith
4. Neal E Magee
5. Nathan C Sheffield
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 29, 2020Latest activity Jan 31, 2022
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

This article has 29 authors:
1. Bo Song
2. Yue Song
3. Yuan Fu
4. Elizabeth Balyejusa Kizito
5. Sandra Ndagire Kamenya
6. Pamela Nahamya Kabod
7. Huan Liu
8. Samuel Muthemba
9. Robert Kariba
10. Joyce Njuguna
11. Solomon Maina
12. Francesca Stomeo
13. Appolinaire Djikeng
14. Prasad S Hendre
15. Xiaoli Chen
16. Wenbin Chen
17. Xiuli Li
18. Wenjing Sun
19. Sibo Wang
20. Shifeng Cheng
21. Alice Muchugi
22. Ramni Jamnadass
23. Howard-Yana Shapiro
24. Allen Van Deynze
25. Huanming Yang
26. Jian Wang
27. Xun Xu
28. Damaris Achieng Odeny
29. Xin Liu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Jan 31, 2022
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

This article has 5 authors:
1. Sion C Bayliss
2. Harry A Thorpe
3. Nicola M Coyle
4. Samuel K Sheppard
5. Edward J Feil
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2019Latest activity Jan 31, 2022
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

This article has 4 authors:
1. Elena Bushmanova
2. Dmitry Antipov
3. Alla Lapidus
4. Andrey D Prjibelski
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
rCASC: reproducible classification analysis of single-cell sequencing data

This article has 11 authors:
1. Luca Alessandrì
2. Francesca Cordero
3. Marco Beccuti
4. Maddalena Arigoni
5. Martina Olivero
6. Greta Romano
7. Sergio Rabellino
8. Nicola Licheri
9. Gennaro De Libero
10. Luigia Pace
11. Raffaele A Calogero
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
Evaluating stably expressed genes in single cells

This article has 9 authors:
1. Yingxin Lin
2. Shila Ghazanfar
3. Dario Strbenac
4. Andy Wang
5. Ellis Patrick
6. David M Lin
7. Terence Speed
8. Jean Y H Yang
9. Pengyi Yang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
A field guide for the compositional analysis of any-omics data

This article has 6 authors:
1. Thomas P Quinn
2. Ionas Erb
3. Greg Gloor
4. Cedric Notredame
5. Mark F Richardson
6. Tamsyn M Crowley
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2019Latest activity Jan 31, 2022
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

This article has 4 authors:
1. Marek Wiewiórka
2. Agnieszka Szmurło
3. Wiktor Kuśmirek
4. Tomasz Gambin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2019Latest activity Jan 31, 2022
Machado: Open source genomics data integration framework

This article has 2 authors:
1. Mauricio de Alvarenga Mudadu
2. Adhemar Zerlotini
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2020Latest activity Jan 31, 2022
Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli

This article has 4 authors:
1. David R Greig
2. Claire Jenkins
3. Saheer Gharbia
4. Timothy J Dallman
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2019Latest activity Jan 31, 2022
VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock

This article has 4 authors:
1. Sara Silva Pereira
2. John Heap
3. Andrew R Jones
4. Andrew P Jackson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 29, 2019Latest activity Jan 31, 2022
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies

This article has 6 authors:
1. Jonathan A. Atkinson
2. Guillaume Lobet
3. Manuel Noll
4. Patrick E. Meyer
5. Marcus Griffiths
6. Darren M. Wells
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 23, 2017Latest activity Jan 31, 2022
Parallel sequencing lives, or what makes large sequencing projects successful

This article has 10 authors:
1. Javier Quilez
2. Enrique Vidal
3. François Le Dily
4. François Serra
5. Yasmina Cuartero
6. Ralph Stadhouders
7. Thomas Graf
8. Marc A Marti-Renom
9. Miguel Beato
10. Guillaume Filion
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 18, 2017Latest activity Jan 31, 2022
Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade

This article has 2 authors:
1. Daniel H. Chitwood
2. Wagner C. Otoni
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2017Latest activity Jan 26, 2022
Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets

This article has 17 authors:
1. Erik C. Johnson
2. Miller Wilt
3. Luis M. Rodriguez
4. Raphael Norman-Tenazas
5. Corban Rivera
6. Nathan Drenkow
7. Dean Kleissas
8. Theodore J. LaGrow
9. Hannah Cowley
10. Joseph Downs
11. Jordan Matelsky
12. Marisa Hughes
13. Elizabeth Reilly
14. Brock Wester
15. Eva Dyer
16. Konrad Kording
17. William Gray-Roncal
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 22, 2019Latest activity Jan 26, 2022
CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing

This article has 5 authors:
1. Milovan Suvakov
2. Arijit Panda
3. Colin Diesh
4. Ian Holmes
5. Alexej Abyzov
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2021Latest activity Jan 24, 2022
Building the mega single-cell transcriptome ocular meta-atlas

This article has 4 authors:
1. Vinay S Swamy
2. Temesgen D Fufa
3. Robert B Hufnagel
4. David M McGaughey
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2021Latest activity Jan 24, 2022
A chromosome-level genome assembly for the eastern fence lizard ( Sceloporus undulatus ), a reptile model for physiological and evolutionary ecology

This article has 20 authors:
1. Aundrea K Westfall
2. Rory S Telemeco
3. Mariana B Grizante
4. Damien S Waits
5. Amanda D Clark
6. Dasia Y Simpson
7. Randy L Klabacka
8. Alexis P Sullivan
9. George H Perry
10. Michael W Sears
11. Christian L Cox
12. Robert M Cox
13. Matthew E Gifford
14. Henry B John-Alder
15. Tracy Langkilde
16. Michael J Angilletta
17. Adam D Leaché
18. Marc Tollis
19. Kenro Kusumi
20. Tonia S Schwartz
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2021Latest activity Jan 24, 2022
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

This article has 11 authors:
1. Nicolás Gaggion
2. Federico Ariel
3. Vladimir Daric
4. Éric Lambert
5. Simon Legendre
6. Thomas Roulé
7. Alejandra Camoirano
8. Diego H Milone
9. Martin Crespi
10. Thomas Blein
11. Enzo Ferrante
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2021Latest activity Jan 24, 2022
Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig

This article has 8 authors:
1. Daniela Gaio
2. Matthew Z. DeMaere
3. Kay Anantanawat
4. Graeme J. Eamens
5. Linda Falconer
6. Toni A. Chapman
7. Steven Djordjevic
8. Aaron E. Darling
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 24, 2022Latest activity Jan 24, 2022

Evaluated articles

Refgenie: a reference genome resource manager

Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

rCASC: reproducible classification analysis of single-cell sequencing data

Evaluating stably expressed genes in single cells

A field guide for the compositional analysis of any-omics data

SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

Machado: Open source genomics data integration framework

Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli

VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies

Parallel sequencing lives, or what makes large sequencing projects successful

Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade

Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets

CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing

Building the mega single-cell transcriptome ocular meta-atlas

A chromosome-level genome assembly for the eastern fence lizard ( Sceloporus undulatus ), a reptile model for physiological and evolutionary ecology

ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig