Evaluated articles

Showing page 11 of 19 pages of list content

Gene-set Enrichment with Mathematical Biology (GEMB)

This article has 5 authors:
1. Amy L Cochran
2. Kenneth J Nieser
3. Daniel B Forger
4. Sebastian Zöllner
5. Melvin G McInnis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 1, 2020Latest activity Jan 24, 2022
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

This article has 6 authors:
1. Damien Courtine
2. Jan Provaznik
3. Jerome Reboul
4. Guillaume Blanc
5. Vladimir Benes
6. Jonathan J Ewbank
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 1, 2020Latest activity Jan 24, 2022
A haplotype-resolved, de novo genome assembly for the wood tiger moth ( Arctia plantaginis ) through trio binning

This article has 11 authors:
1. Eugenie C Yen
2. Shane A McCarthy
3. Juan A Galarza
4. Tomas N Generalovic
5. Sarah Pelan
6. Petr Nguyen
7. Joana I Meier
8. Ian A Warren
9. Johanna Mappes
10. Richard Durbin
11. Chris D Jiggins
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2020Latest activity Jan 24, 2022
Scientometric trends for coronaviruses and other emerging viral infections

This article has 3 authors:
1. Dima Kagan
2. Jacob Moran-Gilad
3. Michael Fire
Reviewed by GigaScience, ScreenIT

This article has 2 evaluationsAppears in 2 listsLatest version Aug 1, 2020Latest activity Jan 24, 2022
Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

This article has 5 authors:
1. Xiang Zhou
2. Hua Chai
3. Huiying Zhao
4. Ching-Hsing Luo
5. Yuedong Yang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2020Latest activity Jan 24, 2022
Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

This article has 4 authors:
1. Kirill Kryukov
2. Mahoko Takahashi Ueda
3. So Nakagawa
4. Tadashi Imanishi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2020Latest activity Jan 24, 2022
Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat

This article has 6 authors:
1. Fu-Hao Lu
2. Neil McKenzie
3. Laura-Jayne Gardiner
4. Ming-Cheng Luo
5. Anthony Hall
6. Michael W Bevan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish

This article has 7 authors:
1. Lisa K Johnson
2. Ruta Sahasrabudhe
3. James Anthony Gill
4. Jennifer L Roach
5. Lutz Froenicke
6. C Titus Brown
7. Andrew Whitehead
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

This article has 5 authors:
1. Victor A Padilha
2. Omer S Alkhnbashi
3. Shiraz A Shah
4. André C P L F de Carvalho
5. Rolf Backofen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
An improved pig reference genome sequence to enable pig genetics and genomics research

This article has 40 authors:
1. Amanda Warr
2. Nabeel Affara
3. Bronwen Aken
4. Hamid Beiki
5. Derek M Bickhart
6. Konstantinos Billis
7. William Chow
8. Lel Eory
9. Heather A Finlayson
10. Paul Flicek
11. Carlos G Girón
12. Darren K Griffin
13. Richard Hall
14. Greg Hannum
15. Thibaut Hourlier
16. Kerstin Howe
17. David A Hume
18. Osagie Izuogu
19. Kristi Kim
20. Sergey Koren
21. Haibou Liu
22. Nancy Manchanda
23. Fergal J Martin
24. Dan J Nonneman
25. Rebecca E O'Connor
26. Adam M Phillippy
27. Gary A Rohrer
28. Benjamin D Rosen
29. Laurie A Rund
30. Carole A Sargent
31. Lawrence B Schook
32. Steven G Schroeder
33. Ariel S Schwartz
34. Ben M Skinner
35. Richard Talbot
36. Elizabeth Tseng
37. Christopher K Tuggle
38. Mick Watson
39. Timothy P L Smith
40. Alan L Archibald
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

This article has 6 authors:
1. Saber Hafezqorani
2. Chen Yang
3. Theodora Lo
4. Ka Ming Nip
5. René L Warren
6. Inanc Birol
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat

This article has 10 authors:
1. Wenxi Wang
2. Zihao Wang
3. Xintong Li
4. Zhongfu Ni
5. Zhaorong Hu
6. Mingming Xin
7. Huiru Peng
8. Yingyin Yao
9. Qixin Sun
10. Weilong Guo
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity

This article has 8 authors:
1. Benjamin B Chu
2. Kevin L Keys
3. Christopher A German
4. Hua Zhou
5. Jin J Zhou
6. Eric M Sobel
7. Janet S Sinsheimer
8. Kenneth Lange
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2020Latest activity Jan 24, 2022
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

This article has 27 authors:
1. Junhua Li
2. Huanzi Zhong
3. Yuliaxis Ramayo-Caldas
4. Nicolas Terrapon
5. Vincent Lombard
6. Gabrielle Potocki-Veronese
7. Jordi Estellé
8. Milka Popova
9. Ziyi Yang
10. Hui Zhang
11. Fang Li
12. Shanmei Tang
13. Fangming Yang
14. Weineng Chen
15. Bing Chen
16. Jiyang Li
17. Jing Guo
18. Cécile Martin
19. Emmanuelle Maguin
20. Xun Xu
21. Huanming Yang
22. Jian Wang
23. Lise Madsen
24. Karsten Kristiansen
25. Bernard Henrissat
26. Stanislav D Ehrlich
27. Diego P Morgavi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 30, 2020Latest activity Jan 24, 2022
parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

This article has 11 authors:
1. Alessandro Petrini
2. Marco Mesiti
3. Max Schubach
4. Marco Frasca
5. Daniel Danis
6. Matteo Re
7. Giuliano Grossi
8. Luca Cappelletti
9. Tiziana Castrignanò
10. Peter N Robinson
11. Giorgio Valentini
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
High-quality chromosome-scale assembly of the walnut ( Juglans regia L.) reference genome

This article has 16 authors:
1. Annarita Marrano
2. Monica Britton
3. Paulo A Zaini
4. Aleksey V Zimin
5. Rachael E Workman
6. Daniela Puiu
7. Luca Bianco
8. Erica Adele Di Pierro
9. Brian J Allen
10. Sandeep Chakraborty
11. Michela Troggio
12. Charles A Leslie
13. Winston Timp
14. Abhaya Dandekar
15. Steven L Salzberg
16. David B Neale
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

This article has 4 authors:
1. Morteza Hosseini
2. Diogo Pratas
3. Burkhard Morgenstern
4. Armando J Pinho
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

This article has 6 authors:
1. Katarzyna Murat
2. Björn Grüning
3. Paulina Wiktoria Poterlowicz
4. Gillian Westgate
5. Desmond J Tobin
6. Krzysztof Poterlowicz
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 19, 2019Latest activity Jan 24, 2022
Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal

This article has 10 authors:
1. Graham J Etherington
2. Darren Heavens
3. David Baker
4. Ashleigh Lister
5. Rose McNelly
6. Gonzalo Garcia
7. Bernardo Clavijo
8. Iain Macaulay
9. Wilfried Haerty
10. Federica Di Palma
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
Community standards for open cell migration data

This article has 25 authors:
1. Alejandra N Gonzalez-Beltran
2. Paola Masuzzo
3. Christophe Ampe
4. Gert-Jan Bakker
5. Sébastien Besson
6. Robert H Eibl
7. Peter Friedl
8. Matthias Gunzer
9. Mark Kittisopikul
10. Sylvia E Le Dévédec
11. Simone Leo
12. Josh Moore
13. Yael Paran
14. Jaime Prilusky
15. Philippe Rocca-Serra
16. Philippe Roudot
17. Marc Schuster
18. Gwendolien Sergeant
19. Staffan Strömblad
20. Jason R Swedlow
21. Merijn van Erp
22. Marleen Van Troys
23. Assaf Zaritsky
24. Susanna-Assunta Sansone
25. Lennart Martens
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022

Evaluated articles

Gene-set Enrichment with Mathematical Biology (GEMB)

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

A haplotype-resolved, de novo genome assembly for the wood tiger moth ( Arctia plantaginis ) through trio binning

Scientometric trends for coronaviruses and other emerging viral infections

Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat

Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish

CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

An improved pig reference genome sequence to enable pig genetics and genomics research

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat

Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

High-quality chromosome-scale assembly of the walnut ( Juglans regia L.) reference genome

Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal

Community standards for open cell migration data