GigaScience

Latest preprint reviews

1. Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION ^TM portable nanopore sequencer

   This article has 3 authors:

   1. Alfonso Benítez-Páez
   2. Kevin J. Portune
   3. Yolanda Sanz

   Reviewed by GigaScience

2. A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

   This article has 6 authors:

   1. Judith Risse
   2. Marian Thomson
   3. Garry Blakely
   4. Georgios Koutsovoulos
   5. Mark Blaxter
   6. Mick Watson

   Reviewed by GigaScience

3. NCBI BLAST + integrated into Galaxy

   This article has 5 authors:

   1. Peter J. A. Cock
   2. John M. Chilton
   3. Björn Grüning
   4. James E. Johnson
   5. Nicola Soranzo

   Reviewed by GigaScience

4. ISA API: An open platform for interoperable life science experimental metadata

   This article has 20 authors:

   1. David Johnson
   2. Keeva Cochrane
   3. Robert P. Davey
   4. Anthony Etuk
   5. Alejandra Gonzalez-Beltran
   6. Kenneth Haug
   7. Massimiliano Izzo
   8. Martin Larralde
   9. Thomas N. Lawson
   10. Alice Minotto
   11. Pablo Moreno
   12. Venkata Chandrasekhar Nainala
   13. Claire O’Donovan
   14. Luca Pireddu
   15. Pierrick Roger
   16. Felix Shaw
   17. Christoph Steinbeck
   18. Ralf J. M. Weber
   19. Susanna-Assunta Sansone
   20. Philippe Rocca-Serra

   Reviewed by GigaScience

5. RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

   This article has 10 authors:

   1. Vikas Gupta
   2. April D. Estrada
   3. Ivory Blakley
   4. Rob Reid
   5. Ketan Patel
   6. Mason D. Meyer
   7. Stig Uggerhøj Andersen
   8. Allan F. Brown
   9. Mary Ann Lila
   10. Ann E. Loraine

   Reviewed by GigaScience

6. A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

   This article has 3 authors:

   1. Joshua Quick
   2. Aaron Quinlan
   3. Nicholas J Loman

   Reviewed by GigaScience

7. A data repository and analysis framework for spontaneous neural activity recordings in developing retina

   This article has 6 authors:

   1. Stephen John Eglen
   2. Michael Weeks
   3. Mark Jessop
   4. Jennifer Simonotto
   5. Tom Jackson
   6. Evelyne Sernagor

   Reviewed by GigaScience

8. A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)

   This article has 20 authors:

   1. Ralf C Mueller
   2. Patrik Ellström
   3. Kerstin Howe
   4. Marcela Uliano-Silva
   5. Richard I Kuo
   6. Katarzyna Miedzinska
   7. Amanda Warr
   8. Olivier Fedrigo
   9. Bettina Haase
   10. Jacquelyn Mountcastle
   11. William Chow
   12. James Torrance
   13. Jonathan M D Wood
   14. Josef D Järhult
   15. Mahmoud M Naguib
   16. Björn Olsen
   17. Erich D Jarvis
   18. Jacqueline Smith
   19. Lél Eöry
   20. Robert H S Kraus

   Reviewed by GigaScience

9. An overview of the National COVID-19 Chest Imaging Database: data quality and cohort analysis

   This article has 16 authors:

   1. Dominic Cushnan
   2. Oscar Bennett
   3. Rosalind Berka
   4. Ottavia Bertolli
   5. Ashwin Chopra
   6. Samie Dorgham
   7. Alberto Favaro
   8. Tara Ganepola
   9. Mark Halling-Brown
   10. Gergely Imreh
   11. Joseph Jacob
   12. Emily Jefferson
   13. François Lemarchand
   14. Daniel Schofield
   15. Jeremy C Wyatt
   16. NCCID Collaborative

   Reviewed by GigaScience, ScreenIT

10. Population modeling with machine learning can enhance measures of mental health

    This article has 6 authors:

    1. Kamalaker Dadi
    2. Gaël Varoquaux
    3. Josselin Houenou
    4. Danilo Bzdok
    5. Bertrand Thirion
    6. Denis Engemann

    Reviewed by GigaScience