GigaScience

Latest preprint reviews

1. Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

   This article has 7 authors:

   1. Mitchell J Feldmann
   2. Michael A Hardigan
   3. Randi A Famula
   4. Cindy M López
   5. Amy Tabb
   6. Glenn S Cole
   7. Steven J Knapp

   Reviewed by GigaScience

2. Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

   This article has 2 authors:

   1. Karl A Johnson
   2. Guy M Hagen

   Reviewed by GigaScience

3. Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

   This article has 7 authors:

   1. Marco Antonio Tangaro
   2. Giacinto Donvito
   3. Marica Antonacci
   4. Matteo Chiara
   5. Pietro Mandreoli
   6. Graziano Pesole
   7. Federico Zambelli

   Reviewed by GigaScience

4. ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

   This article has 4 authors:

   1. Stephen R Piccolo
   2. Terry J Lee
   3. Erica Suh
   4. Kimball Hill

   Reviewed by GigaScience

5. Binning unassembled short reads based on k -mer abundance covariance using sparse coding

   This article has 5 authors:

   1. Olexiy Kyrgyzov
   2. Vincent Prost
   3. Stéphane Gazut
   4. Bruno Farcy
   5. Thomas Brüls

   Reviewed by GigaScience

6. Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

   This article has 7 authors:

   1. Thomas McGowan
   2. James E Johnson
   3. Praveen Kumar
   4. Ray Sajulga
   5. Subina Mehta
   6. Pratik D Jagtap
   7. Timothy J Griffin

   Reviewed by GigaScience

7. Interpretable and accurate prediction models for metagenomics data

   This article has 7 authors:

   1. Edi Prifti
   2. Yann Chevaleyre
   3. Blaise Hanczar
   4. Eugeni Belda
   5. Antoine Danchin
   6. Karine Clément
   7. Jean-Daniel Zucker

   Reviewed by GigaScience

8. GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

   This article has 5 authors:

   1. Ekaterina Noskova
   2. Vladimir Ulyantsev
   3. Klaus-Peter Koepfli
   4. Stephen J O'Brien
   5. Pavel Dobrynin

   Reviewed by GigaScience

9. Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

   This article has 2 authors:

   1. Zheng Li
   2. Michael S Barker

   Reviewed by GigaScience

10. HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

    This article has 14 authors:

    1. Jerven Bolleman
    2. Edouard de Castro
    3. Delphine Baratin
    4. Sebastien Gehant
    5. Beatrice A Cuche
    6. Andrea H Auchincloss
    7. Elisabeth Coudert
    8. Chantal Hulo
    9. Patrick Masson
    10. Ivo Pedruzzi
    11. Catherine Rivoire
    12. Ioannis Xenarios
    13. Nicole Redaschi
    14. Alan Bridge

    Reviewed by GigaScience