GigaByte

Latest preprint reviews

1. Mycobacterial Metabolic Model Development for Drug Target Identification

   This article has 3 authors:

   1. Bridget P. Bannerman
   2. Alex Oarga
   3. Jorge Júlvez

   This article has been curated by 1 group:

   • Curated by GigaByte

     Editor’s Assessment

     This work has generated metabolic models for the human pathogens Mycobacterium leprae and Mycobacteroides abscessus, alongside a new computational tool that can be used to identify potential drug targets. The standardised genomic scale metabolic models have been developed using the systems biology community standards for quality control and evaluation of models. After providing more detail on reproducibility, comparative performance of the models, and reuse, these resources are now published and are available for reuse by the global scientific community via the GigaDB, Biomodels, and PatMeDB repositories.

     This assessment refers to version 1 of this preprint.

   Reviewed by GigaByte

2. Genome assembly of the deep-sea coral Lophelia pertusa

   This article has 2 authors:

   1. Santiago Herrera
   2. Erik E. Cordes

   Reviewed by GigaByte

3. The first genome assembly of the amphibian nematode parasite ( Aplectana chamaeleonis )

   This article has 4 authors:

   1. Lei Han
   2. Tianlu Liu
   3. Fengping He
   4. Zhijun Hou

   Reviewed by GigaByte

4. PhysiCOOL: A generalized framework for model Calibration and Optimization Of modeLing projects

   This article has 5 authors:

   1. Inês G. Gonçalves
   2. David A. Hormuth
   3. Sandhya Prabhakaran
   4. Caleb M. Phillips
   5. José Manuel García-Aznar

   Reviewed by GigaByte

5. Improvements to the Gulf Pipefish Syngnathus scovelli Genome

   This article has 10 authors:

   1. B Ramesh
   2. CM Small
   3. H Healey
   4. B Johnson
   5. E Barker
   6. M Currey
   7. S Bassham
   8. M Myers
   9. WA Cresko
   10. AG Jones

   Reviewed by GigaByte

6. Nanopore-based enrichment of antimicrobial resistance genes – a case-based study

   This article has 6 authors:

   1. Adrian Viehweger
   2. Mike Marquet
   3. Martin Hölzer
   4. Nadine Dietze
   5. Mathias W. Pletz
   6. Christian Brandt

   Reviewed by GigaByte

7. The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)

   This article has 9 authors:

   1. Audrey J. Majeske
   2. Alejandro J. Mercado Capote
   3. Aleksey Komissarov
   4. Anna Bogdanova
   5. Nikolaos V. Schizas
   6. Stephanie O. Castro Márquez
   7. Kenneth Hilkert
   8. Walter Wolfsberger
   9. Tarás K. Oleksyk

   Reviewed by GigaByte

8. PhysiPKPD: A pharmacokinetics and pharmacodynamics module for PhysiCell

   This article has 7 authors:

   1. Daniel Bergman
   2. Lauren Marazzi
   3. Mukti Chowkwale
   4. Deepa Maheshvare M
   5. Supriya Bidanta
   6. Tarunendu Mapder
   7. Jialun Li

   Reviewed by GigaByte

9. A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research

   This article has 12 authors:

   1. Nataly Allasi Canales
   2. Oscar A. Pérez-Escobar
   3. Robyn F. Powell
   4. Mats Töpel
   5. Catherine Kidner
   6. Mark Nesbitt
   7. Carla Maldonado
   8. Christopher J. Barnes
   9. Nina Rønsted
   10. Natalia A. S. Przelomska
   11. Ilia J. Leitch
   12. Alexandre Antonelli

   Reviewed by GigaByte

10. svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

    This article has 4 authors:

    1. Ruining Dong
    2. Daniel Cameron
    3. Justin Bedo
    4. Anthony T. Papenfuss

    Reviewed by GigaByte