eLife

Latest preprint reviews

1. Evolutionary rescue of phosphomannomutase deficiency in yeast models of human disease

   This article has 8 authors:

   1. Ryan C Vignogna
   2. Mariateresa Allocca
   3. Maria Monticelli
   4. Joy W Norris
   5. Richard Steet
   6. Ethan O Perlstein
   7. Giuseppina Andreotti
   8. Gregory I Lang

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     Vignogna et al. used yeast genetics, experimental evolution and biochemistry to investigate human congenital disorders of glycosylation, often caused by mutations in PMM2. They took advantage of the observation that the budding yeast gene SEC53 is almost identical to human PMM2, and used experimental evolution to find interactors of SEC53/PMM2. Mutations in genes corresponding to other human CDG genes, including PGM1, were overrepresented. The mechanisms of how reduced pgm1 activity could compensate for defects of sec53 are not yet clear.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #2 and Reviewer #3 agreed to share their name with the authors.)

   Reviewed by eLife

2. Fip1 is a multivalent interaction scaffold for processing factors in human mRNA 3′ end biogenesis

   This article has 5 authors:

   1. Lena Maria Muckenfuss
   2. Anabel Carmen Migenda Herranz
   3. Franziska Maria Boneberg
   4. Marcello Clerici
   5. Martin Jinek

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     The authors of this study characterize human Fip1, an important component of the 3' end processing machinery. They use X-ray crystallography to determine the molecular basis of the interactions between Fip1 and CPSF30 (at a 2:1 stoichiometry) and between Fip1 and CstF77 (at a 2:2 stoichiometry). Together with biochemical assays, they suggest that Fip1 may be central to regulating transitions with CPSF. The work will of relevance to colleagues interested in transcription and RNA processing.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #3 agreed to share their name with the authors.)

   Reviewed by eLife

3. Loss of full-length dystrophin expression results in major cell-autonomous abnormalities in proliferating myoblasts

   This article has 12 authors:

   1. Maxime RF Gosselin
   2. Virginie Mournetas
   3. Malgorzata Borczyk
   4. Suraj Verma
   5. Annalisa Occhipinti
   6. Justyna Róg
   7. Lukasz Bozycki
   8. Michal Korostynski
   9. Samuel C Robson
   10. Claudio Angione
   11. Christian Pinset
   12. Dariusz C Gorecki

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     This is an in-depth and rigorous analysis of transcriptomic changes in myogenic cells lacking dystrophin. Studies are made in both a mouse model and human subjects. the paper bears on possible roles of such alterations in pathogenesis of Duchenne muscular dystrophy. They draw attention to new therapeutic interventions for this condition.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

   Reviewed by eLife

4. Stage-dependent differential influence of metabolic and structural networks on memory across Alzheimer’s disease continuum

   This article has 9 authors:

   1. Kok Pin Ng
   2. Xing Qian
   3. Kwun Kei Ng
   4. Fang Ji
   5. Pedro Rosa-Neto
   6. Serge Gauthier
   7. Nagaendran Kandiah
   8. Juan Helen Zhou
   9. Alzheimer's Disease Neuroimaging Initiative

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     This work is of interest to neuroscientists and medical professionals involved in the study of Alzheimer's disease and related neurodegenerative conditions. The findings provide important information about how potential network-based structural and metabolic imaging biomarkers are associated with memory performance during distinct disease stages, in line with previous hypothetical biomarker models. The study is conceptually and methodologically sound, although some aspects of the analysis and reporting of the results could be further clarified.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #2 agreed to share their name with the authors.)

   Reviewed by eLife

5. Predicting progression-free survival after systemic therapy in advanced head and neck cancer: Bayesian regression and model development

   This article has 22 authors:

   1. Paul R Barber
   2. Rami Mustapha
   3. Fabian Flores-Borja
   4. Giovanna Alfano
   5. Kenrick Ng
   6. Gregory Weitsman
   7. Luigi Dolcetti
   8. Ali Abdulnabi Suwaidan
   9. Felix Wong
   10. Jose M Vicencio
   11. Myria Galazi
   12. James W Opzoomer
   13. James N Arnold
   14. Selvam Thavaraj
   15. Shahram Kordasti
   16. Jana Doyle
   17. Jon Greenberg
   18. Magnus T Dillon
   19. Kevin J Harrington
   20. Martin Forster
   21. Anthony CC Coolen
   22. Tony Ng

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     Barber et al present a manuscript discussing predictive factors for chemotherapy efficacy in head and neck squamous cancer (HNSCC). The paper is well written, and its style/formatting are optimal. The baseline signature moderately predicted outcome, and the data after one cycle further improved the algorithm, though this decreases its utility as a pure predictive tool. It is interesting that a subpopulation of monocytes, a subset of white peripheral cells long suspected to correlate with outcomes in HNSCC was one of the key drivers of the algorithm. However the overall impact in the field of this work seems limited by a number of factors, including that the authors focused on immune cell subpopulations and exosomes, which narrows the scope (no cytokines or other biomarkers were included); the signatures were not prospectively validated on an independent cohort; the algorithm was developed around a first-line therapy that is no longer considered to be the standard of care for HNSCC; and, while most of the conclusions are supported by the data, some of the caveats (such as the lack of a validation cohort, key in predictive biomarker development), are not addressed.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

   Reviewed by eLife

6. Versatile patterns in the actin cortex of motile cells: Self-organized pulses can coexist with macropinocytic ring-shaped waves

   This article has 3 authors:

   1. Arik Yochelis
   2. Sven Flemming
   3. Carsten Beta

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     Individual cells may act in response to stimuli or in a self-organized fashion. The relative weight of these two modes determines in the end to which degree cells or rather organs/organisms carry function. This study reports an example of very complex self-organization of actin waves as the coexistence of slowly moving broad waves of high F-actin concentration and rapidly propagating planar F-actin pulses. The paper is interesting for everybody interested in conceptual questions like signalling versus self-organization, in cellular morpho-dynamics and theory of dynamic patterns.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

   Reviewed by eLife

7. A remarkable adaptive paradigm of heart performance and protection emerges in response to marked cardiac-specific overexpression of ADCY8

   This article has 38 authors:

   1. Kirill V Tarasov
   2. Khalid Chakir
   3. Daniel R Riordon
   4. Alexey E Lyashkov
   5. Ismayil Ahmet
   6. Maria Grazia Perino
   7. Allwin Jennifa Silvester
   8. Jing Zhang
   9. Mingyi Wang
   10. Yevgeniya O Lukyanenko
   11. Jia-Hua Qu
   12. Miguel Calvo-Rubio Barrera
   13. Magdalena Juhaszova
   14. Yelena S Tarasova
   15. Bruce Ziman
   16. Richard Telljohann
   17. Vikas Kumar
   18. Mark Ranek
   19. John Lammons
   20. Rostislav Bychkov
   21. Rafael de Cabo
   22. Seungho Jun
   23. Gizem Keceli
   24. Ashish Gupta
   25. Dongmei Yang
   26. Miguel A Aon
   27. Luigi Adamo
   28. Christopher H Morrell
   29. Walter Otu
   30. Cameron Carroll
   31. Shane Chambers
   32. Nazareno Paolocci
   33. Thanh Huynh
   34. Karel Pacak
   35. Robert Weiss
   36. Loren Field
   37. Steven J Sollott
   38. Edward G Lakatta

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     The study is overall well-planned and the amount of data presented by the authors is impressive. The work nicely incorporates animal-level physiology (echocardiography data), tests for known canonical markers of hypertrophy, and then delves into an unbiased analysis of the transcriptome and proteome of LV tissue in bulk. The techniques and analyses in the study are adequately executed and within the realm of expertise of the Lakatta laboratory. This study is a necessary and crucial first step to extensively phenotype this mouse line and generate hypotheses for further work.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 agreed to share their name with the authors.)

   Reviewed by eLife

8. Most cancers carry a substantial deleterious load due to Hill-Robertson interference

   This article has 5 authors:

   1. Susanne Tilk
   2. Svyatoslav Tkachenko
   3. Christina Curtis
   4. Dmitri A Petrov
   5. Christopher D McFarland

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     Cancers have frequently been found to show little evidence for purifying selection in their patterns of mutations. The key observation here is that tumors with low mutation burden show compelling evidence of efficient selection, but that tumors with high mutation burden do not. This is an important finding. The broader implication is that high mutation load tumors carry a substantial deleterious mutation load and may use common strategies to tolerate them, possibly providing a therapeutic target. Overall this work makes important observational and conceptual contributions to cancer genomics.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 and Reviewer #3 agreed to share their name with the authors.)

   Reviewed by eLife

9. Developmental Transitions Coordinate Assembly of the Coxiella burnetii Dot/Icm Type IV Secretion System

   This article has 5 authors:

   1. Donghyun Park
   2. Samuel Steiner
   3. Meng Shao
   4. Craig R. Roy
   5. Jun Liu

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     Park et al.'s work provides insight into the infection processes of the human pathogen Coxiella burnetii with unprecedented detail. Their time course of cellular infection reveals the timing of key events and detects a previously unrecognized membrane structure. This work will shed new insight into the infection process of this pathogen allowing new targets for the treatment of infection with Coxiella.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #2 agreed to share their name with the authors.)

   Reviewed by eLife

10. Conduction velocity along a key white matter tract is associated with autobiographical memory recall ability

    This article has 4 authors:

    1. Ian A Clark
    2. Siawoosh Mohammadi
    3. Martina F Callaghan
    4. Eleanor A Maguire

    This article has been curated by 1 group:

    • Curated by eLife

      Evaluation Summary:

      In this paper, the authors show that autobiographical memory recall is related to a specific biophysical property of the parahippocampal cingulum bundle, the so-called MR g-ratio. This paper will be of interest to neuroscientists studying associations between brain structure and cognitive processes. The data support the main conclusions of the paper. However, it is unclear how reliable the results are and whether the findings would generalize to situations beyond the specific one studied.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

    Reviewed by eLife