Arcadia Science

Latest preprint reviews

1. Robust phylogenetic tree-based microbiome association test using repeatedly measured data for composition bias

   This article has 2 authors:

   1. Kangjin Kim
   2. Sungho Won

   Reviewed by Arcadia Science

2. A class of secreted mammalian peptides with potential to expand cell-cell communication

   This article has 9 authors:

   1. Amanda L. Wiggenhorn
   2. Hind Z. Abuzaid
   3. Laetitia Coassolo
   4. Veronica L. Li
   5. Julia T. Tanzo
   6. Wei Wei
   7. Xuchao Lyu
   8. Katrin J. Svensson
   9. Jonathan Z. Long

   Reviewed by Arcadia Science

3. Spatiotemporal Mapping of Brain Cilia Reveals Region-Specific Oscillation of Length and Orientation

   This article has 13 authors:

   1. Roudabeh Vakil Monfared
   2. Sherif Abdelkarim
   3. Pieter Derdeyn
   4. Kiki Chen
   5. Hanting Wu
   6. Kenneth Leong
   7. Tiffany Chang
   8. Justine Lee
   9. Sara Versales
   10. Surya M. Nauli
   11. Kevin Beier
   12. Pierre Baldi
   13. Amal Alachkar

   Reviewed by Arcadia Science

4. Monitoring norepinephrine release in vivo using next-generation GRAB _NE sensors

   This article has 12 authors:

   1. Jiesi Feng
   2. Hui Dong
   3. Julieta Lischinsky
   4. Jingheng Zhou
   5. Fei Deng
   6. Chaowei Zhuang
   7. Xiaolei Miao
   8. Huan Wang
   9. Hao Xie
   10. Guohong Cui
   11. Dayu Lin
   12. Yulong Li

   Reviewed by Arcadia Science

5. Deep learning image analysis for filamentous fungi taxonomic classification: Dealing with small datasets with class imbalance and hierarchical grouping

   This article has 5 authors:

   1. Stefan Stiller
   2. Juan F Dueñas
   3. Stefan Hempel
   4. Matthias C Rillig
   5. Masahiro Ryo

   Reviewed by Arcadia Science

6. Dissecting the phase separation and oligomerization activities of the carboxysome positioning protein McdB

   This article has 6 authors:

   1. Joseph L Basalla
   2. Claudia A Mak
   3. Jordan A Byrne
   4. Maria Ghalmi
   5. Y Hoang
   6. Anthony G Vecchiarelli

   This article has been curated by 1 group:

   • Curated by eLife

     Evaluation Summary:

     Carboxysomes enable the efficient fixation of carbon dioxide in specific bacteria. Phase separation has been invoked as a mechanism that drives the formation of carboxysomes. The current work focuses on the biophysical principles of how one of two essential specific protein components enable spatial regulation over carboxysomes. This important work highlights the connection between oligomerization via specific molecular interactions and phase separation. The work is of interest to the areas of biochemistry and carbon dioxide fixation as well as phase separation.

     (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #3 agreed to share their name with the authors.)

   Reviewed by Arcadia Science, eLife

7. zDB: bacterial comparative genomics made easy

   This article has 4 authors:

   1. Bastian Marquis
   2. Trestan Pillonel
   3. Alessia Carrara
   4. Claire Bertelli

   Reviewed by Arcadia Science

8. Cell specification and functional interactions in the pig blastocyst inferred from single-cell transcriptomics and uterine fluids proteomics

   This article has 14 authors:

   1. Adrien Dufour
   2. Cyril Kurylo
   3. Jan B. Stöckl
   4. Denis Laloë
   5. Yoann Bailly
   6. Patrick Manceau
   7. Frédéric Martins
   8. Ali G. Turhan
   9. Stéphane Ferchaud
   10. Bertrand Pain
   11. Thomas Fröhlich
   12. Sylvain Foissac
   13. Jérôme Artus
   14. Hervé Acloque

   Reviewed by Arcadia Science

9. IntAct: a non-disruptive internal tagging strategy to study actin isoform organization and function

   This article has 9 authors:

   1. M.C. van Zwam
   2. A. Dhar
   3. W. Bosman
   4. W. van Straaten
   5. S. Weijers
   6. E. Seta
   7. B. Joosten
   8. S. Palani
   9. K. van den Dries

   Reviewed by Review Commons, Arcadia Science

10. ESMFold Hallucinates Native-Like Protein Sequences

    This article has 3 authors:

    1. Jeliazko R. Jeliazkov
    2. Diego del Alamo
    3. Joel D. Karpiak

    Reviewed by Arcadia Science