Arcadia Science

Latest preprint reviews

1. Macroscopic label-free biomedical imaging with shortwave infrared Raman scattering

   This article has 20 authors:

   1. Bernardo A. Arús
   2. Joycelyn Yiu
   3. Jakob G. P. Lingg
   4. Anja Hofmann
   5. Amy R. Fumo
   6. Honglei Ji
   7. Carolin Jethwa
   8. Roy K. Park
   9. James Henderson
   10. Kanuj Mishra
   11. Iuliia Mukha
   12. Andre C. Stiel
   13. Donato Santovito
   14. Christian Weber
   15. Christian Reeps
   16. Maria Rohm
   17. Alexander Bartelt
   18. Tulio A. Valdez
   19. Andriy Chmyrov
   20. Oliver T. Bruns

   Reviewed by Arcadia Science

2. Genomic localization bias of secondary metabolite gene clusters and association with histone modifications in Aspergillus

   This article has 4 authors:

   1. Xin Zhang
   2. Iseult Leahy
   3. Jérȏme Collemare
   4. Michael F. Seidl

   Reviewed by Arcadia Science

3. Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits

   This article has 5 authors:

   1. Rachel L. Neve
   2. Emily Giedraitis
   3. Madeline S. Akbari
   4. Shirli Cohen
   5. Vanessa V. Phelan

   Reviewed by Arcadia Science

4. Experimental bleaching of photosymbiotic amoeba revealed strain-dependent differences in algal symbiosis ability

   This article has 5 authors:

   1. Daisuke Yamagishi
   2. Ryo Onuma
   3. Sachihiro Matsunaga
   4. Shin-ya Miyagishima
   5. Shinichiro Maruyama

   Reviewed by Arcadia Science

5. Amidase and lysozyme dual functions in TseP reveal a new family of chimeric effectors in the type VI secretion system

   This article has 8 authors:

   1. Zeng-Hang Wang
   2. Ying An
   3. Ting Zhao
   4. Tong-Tong Pei
   5. Dora Yuping Wang
   6. Xiaoye Liang
   7. Wenming Qin
   8. Tao Dong

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This important study describes how a single effector of the Type Six Secretion System (T6SS) has two distinct functions, which may contribute to bacterial survival and the development of novel antibacterials. The authors utilized various methods in biochemistry, microbiology, and microscopy to produce convincing data supporting their claims about the protein's function; however, they could clarify the implications for non-experts to enhance the accessibility of this work. This manuscript is of interest to those studying T6SS, particularly those interested in effectors and bacterial enzymes.

   Reviewed by eLife, Arcadia Science

6. Structure-aware protein sequence alignment using contrastive learning

   This article has 3 authors:

   1. Ronghui You
   2. Yuhao Yi
   3. Shanfeng Zhu

   Reviewed by Arcadia Science

7. Inference of gene regulatory networks for overcoming low performance in real-world data

   This article has 4 authors:

   1. Yusuke Hiki
   2. Yuta Tokuoka
   3. Takahiro G. Yamada
   4. Akira Funahashi

   Reviewed by Arcadia Science

8. Protein Set Transformer: A protein-based genome language model to power high diversity viromics

   This article has 3 authors:

   1. Cody Martin
   2. Anthony Gitter
   3. Karthik Anantharaman

   Reviewed by Arcadia Science

9. Lepidopteran scale cells derive from sensory organ precursors through a canonical lineage

   This article has 10 authors:

   1. Ling S. Loh
   2. Kyle A. DeMarr
   3. Martina Tsimba
   4. Christa Heryanto
   5. Alejandro Berrio
   6. Nipam H. Patel
   7. Arnaud Martin
   8. W. Owen McMillan
   9. Gregory A. Wray
   10. Joseph J. Hanly

   Reviewed by Arcadia Science

10. Peptide-enabled ribonucleoprotein delivery for CRISPR engineering (PERC) in primary human immune cells and hematopoietic stem cells

    This article has 10 authors:

    1. Srishti U. Sahu
    2. Madalena Castro
    3. Joseph J. Muldoon
    4. Kunica Asija
    5. Stacia K. Wyman
    6. Netravathi Krishnappa
    7. Lorena de Oñate
    8. Justin Eyquem
    9. David N. Nguyen
    10. Ross C. Wilson

    Reviewed by Arcadia Science