Arcadia Science

Latest preprint reviews

1. Graph transformer for ancient ancestry inference

   This article has 4 authors:

   1. Cole Shanks
   2. David Bonet
   3. Marçal Comajoan Cara
   4. Alexander Ioannidis

   Reviewed by Arcadia Science

2. Flow molecular dynamics simulations reveal mechanosensitive regulation of von Willebrand factor through glycan-modulated autoinhibitory modules

   This article has 3 authors:

   1. Naveen E. Louis
   2. Yunduo C. Zhao
   3. Lining A. Ju

   Reviewed by Arcadia Science

3. Towards a Cytometry Foundation Model: Interpretable Sample-level Predictive Modelling via Pretrained Transformers

   This article has 4 authors:

   1. Zixin Zhuang
   2. Benjamin S. Mashford
   3. Liang Zheng
   4. T. Daniel Andrews

   Reviewed by Arcadia Science

4. Benchmarking Agentic Large Language Models for Complex Protein-Set Functional Annotation

   This article has 1 author:

   1. Xiaoyu Zhang

   Reviewed by Arcadia Science

5. Enabling the prediction of phage receptor specificity from genome data

   This article has 14 authors:

   1. Lucas Moriniere
   2. Avery J. C. Noonan
   3. Alexey Kazakov
   4. Melina Pena
   5. Madeline Svab
   6. Edwin O. Rivera-Lopez
   7. Flavien Maucourt
   8. Milo S. Johnson
   9. Simon Roux
   10. Britt Koskella
   11. Adam M. Deutschbauer
   12. Edward G. Dudley
   13. Vivek K. Mutalik
   14. Adam P. Arkin

   Reviewed by Arcadia Science

6. Pseudomonas aeruginosa deploys competitor-specific antagonistic strategies

   This article has 3 authors:

   1. Ziyang Chen
   2. Ned S. Wingreen
   3. Zemer Gitai

   Reviewed by Arcadia Science

7. Label-free assessment of pre-implantation embryo quality by the Fluorescence Lifetime Imaging Microscopy (FLIM)-phasor approach

   This article has 6 authors:

   1. Ning Ma
   2. Nabora Reyes de Mochel
   3. Paula Duyen Pham
   4. Tae Yeon Yoo
   5. Ken W. Y. Cho
   6. Michelle A. Digman

   Reviewed by Arcadia Science

8. Cellulose Synthase Complexes and Remorins Mediate Stress Resilience Through Cell Wall-Plasma Membrane Attachments

   This article has 13 authors:

   1. Yue Rui
   2. Magda Zaoralova
   3. William P. Dwyer
   4. Andres V. Reyes
   5. Tarabryn S. Grismer
   6. Nikolaj B. Abel
   7. Dharanidaran Jayachandran
   8. Shishir P.S. Chundawat
   9. Thomas Ott
   10. Joseph J. Kieber
   11. Peter Dahlberg
   12. Shou-Ling Xu
   13. Jose Ramon Dinneny

   Reviewed by Arcadia Science

9. A global metagenomic atlas uncovers ubiquitous biosynthetic potential linked to adaptation in extreme environments

   This article has 11 authors:

   1. Rubing Du
   2. Ruolin He
   3. Qi Qian
   4. Zhen Li
   5. Qiyong Tang
   6. Zhidong Zhang
   7. Xinming Xu
   8. Haoran Peng
   9. Jun Liu
   10. Marnix H. Medema
   11. Qing Xu

   Reviewed by Arcadia Science

10. BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning

    This article has 34 authors:

    1. Adibvafa Fallahpour
    2. Arman Seyed-Ahmadi
    3. Parsa Idehpour
    4. Omar Ibrahim
    5. Purav Gupta
    6. Jack Naimer
    7. Kevin Zhu
    8. Arnav Shah
    9. Shihao Ma
    10. Abhinav Adduri
    11. Talu Güloglu
    12. Nuo Liu
    13. Haotian Cui
    14. Arihant Jain
    15. Max de Castro
    16. Amirfaham Fallahpour
    17. Antonio Cembellin-Prieto
    18. John S. Stiles
    19. Filip Nemčko
    20. Alexander A. Nevue
    21. Hyungseok C. Moon
    22. Lucas Sosnick
    23. Olivia Markham
    24. Haonan Duan
    25. Michelle Y. Y. Lee
    26. Andrea F. M. Salvador
    27. Chris J. Maddison
    28. Christoph A. Thaiss
    29. Chiara Ricci-Tam
    30. Brian S. Plosky
    31. Dave P. Burke
    32. Patrick D. Hsu
    33. Hani Goodarzi
    34. Bo Wang

    Reviewed by Arcadia Science