Arcadia Science

Latest preprint reviews

1. Characterization of acetate catabolism in Chlamydomonas reinhardtii reveals distinct roles for ACS1 and ACK2 in regulating cell growth and carbon storage

   This article has 3 authors:

   1. Abdulmajid M. Alrefaie
   2. Yi-Ying Lee
   3. Yantao Li

   Reviewed by Arcadia Science

2. A multimodal foundation model linking histopathology and DNA methylation

   This article has 9 authors:

   1. Dannong Wang
   2. Jessica Zhang
   3. Chen Chen
   4. Wei Zhang
   5. Song Wang
   6. Yanda Meng
   7. Guru Sonpavde
   8. Craig Horbinski
   9. Yu Tian

   Reviewed by Arcadia Science

3. Elucidating enzyme–substrate specificity through co-folding foundation model

   This article has 9 authors:

   1. Xiwei Cheng
   2. Seonghwan Seo
   3. Charlie Huh
   4. Jihang Chen
   5. Songlin Jiang
   6. Pengkang Guo
   7. Jing-Ke Weng
   8. Woo Youn Kim
   9. Wengong Jin

   Reviewed by Arcadia Science

4. Spatium: A Protein Language Foundation Model for Spatial Proteomics

   This article has 6 authors:

   1. Tiangang Wang
   2. Sijia Wu
   3. Liyu Huang
   4. Jiajia Liu
   5. Kexin Huang
   6. Xiaobo Zhou

   Reviewed by Arcadia Science

5. Predicting evolutionary rate as a pretraining task improves genome language model representations

   This article has 8 authors:

   1. Micaela Elisa Consens
   2. Kevin K. Yang
   3. Jimmy Hall
   4. Ashley Mae Conard
   5. Bo Wang
   6. Lorin Crawford
   7. Alan Moses
   8. Alex X. Lu

   Reviewed by Arcadia Science

6. Phenotypic complexity makes the molecular basis of evolutionary convergence predictable

   This article has 3 authors:

   1. Daohan Jiang
   2. Matt Pennell
   3. Lauren Sallan

   Reviewed by Arcadia Science

7. Eukaryotic domestication of a bacterial immune protein following horizontal transfer

   This article has 12 authors:

   1. Edward M. Culbertson
   2. Emily Cruz-Lorenzo
   3. Jocelyn Leon Padilla
   4. Megan Halfmann
   5. James R. Drurey
   6. Jeffrey J. Lange
   7. Yao Li
   8. Neha Garlapati
   9. Harshitha Gompa
   10. Benjamin R. Morehouse
   11. Randal Halfmann
   12. Tera C. Levin

   Reviewed by Arcadia Science

8. Convergent responses to light stress in oligohymenophorean ciliates bearing green algal symbionts

   This article has 4 authors:

   1. Joseph Kelly
   2. Niklas Futterknecht
   3. Sven Ernst
   4. Lutz Becks

   Reviewed by Arcadia Science

9. ppGpp regulates transcription elongation via direct and indirect inputs to RNA polymerase pausing and nucleotide addition

   This article has 11 authors:

   1. Andreas U. Mueller
   2. Rachel A. Mooney
   3. Michael D. Engstrom
   4. Yu Bao
   5. Michael B. Wolfe
   6. Balendra Sah
   7. Jonathan Buscher
   8. Jason Saba
   9. James Liu
   10. Seth A. Darst
   11. Robert Landick

   Reviewed by Arcadia Science

10. Muscular dystrophy-associated lamin variants disrupt cellular organization through a nucleolar-ribosomal axis controlling cytoplasmic macromolecular crowding

    This article has 5 authors:

    1. Xiangyi Ding
    2. Sweta Kumari
    3. Ellen Gregory
    4. Daniel A. Starr
    5. G. W. Gant Luxton

    Reviewed by Arcadia Science