1. Spyglass: a framework for reproducible and shareable neuroscience research

    This article has 29 authors:
    1. Kyu Hyun Lee
    2. Eric L Denovellis
    3. Ryan Ly
    4. Jeremy Magland
    5. Jeff Soules
    6. Alison E Comrie
    7. Daniel P Gramling
    8. Jennifer A Guidera
    9. Rhino Nevers
    10. Philip Adenekan
    11. Chris Brozdowski
    12. Samuel R Bray
    13. Emily Monroe
    14. Ji Hyun Bak
    15. Michael E Coulter
    16. Xulu Sun
    17. Emrey Broyles
    18. Donghoon Shin
    19. Sharon Chiang
    20. Cristofer Holobetz
    21. Andrew Tritt
    22. Oliver Rübel
    23. Thinh Nguyen
    24. Dimitri Yatsenko
    25. Joshua Chu
    26. Caleb Kemere
    27. Samuel Garcia
    28. Alessio Buccino
    29. Loren M Frank
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable study presents a framework for a shareable data analysis pipeline aimed at improving reproducibility in neuroscience. The evidence for robustness and inter-laboratory operability is convincing. However, aspects such as accessibility for new users, flexibility for custom analyses, and plans for long-term maintenance remain incomplete. Overall, this work will be of interest to neuroscientists engaged in the analysis of large-scale neuronal recordings.

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  2. A Priming Circuit Controls the Olfactory Response and Memory in Drosophila

    This article has 3 authors:
    1. He Yang
    2. Yang Jiang
    3. Samuel Kunes
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This work, combining behavioural genetics and calcium imaging, provides evidence for a form of learning in Drosophila that derives solely from direct or (optogenetically induced) phantom experience of punishment or reward. Flies that experience foot-shock alone show a subsequent decrease in avoidance to all odorants, together with increased odor-evoked activation of reward-encoding dopaminergic neurons that innervate the mushroom body. Phantom reward, delivered via optogenetic activation of reward-encoding dopaminergic neurons, increases subsequent odour-avoidance. While the findings are valuable to the field, there are aspects of the work that are incomplete, and some of the conclusions and terminology are also not completely justified; three major issues include : (a) the use of the term "priming" to describe this form of learning seems inappropriate and inconsistent with the accepted definition of this term; (b) a key 1998 publication with an initial description of this behavioural phenomenon needs to be cited and presented as context; and (c) the work on reward induced increase in odor-aversion seems relatively preliminary.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  3. Spatiotemporal brain complexity quantifies consciousness outside of perturbation paradigms

    This article has 8 authors:
    1. Martin Breyton
    2. Jan Fousek
    3. Giovanni Rabuffo
    4. Pierpaolo Sorrentino
    5. Lionel Kusch
    6. Marcello Massimini
    7. Spase Petkoski
    8. Viktor Jirsa
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study examined the complexity of emergent dynamics of large-scale neural network models after perturbation (perturbational complexity index, PCI) and used it as a measurement of consciousness to account for previous recordings of humans at various anesthetized levels. The evidence supporting the conclusion is convincing and constitutes a unified framework for different observations related to consciousness. There are many fields that would be interested in this study, including cognitive neuroscience, psychology, complex systems, neural networks, and neural dynamics.

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    This article has 7 evaluationsAppears in 1 listLatest version Latest activity
  4. Modulation of aperiodic EEG activity provides sensitive index of cognitive state changes during working memory task

    This article has 5 authors:
    1. Tisa Frelih
    2. Andraž Matkovič
    3. Tjaša Mlinarič
    4. Jurij Bon
    5. Grega Repovš
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable work explores the timely idea that aperiodic activity in human electrophysiology recordings is dynamically modulated in response to task events in a manner that may be relevant for behavioral performance. Moreover, the authors present solid evidence that, in some circumstances, these aperiodic changes might be misinterpreted as oscillatory changes.

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    This article has 15 evaluationsAppears in 1 listLatest version Latest activity
  5. Starvation transforms signal encoding in C. elegans thermoresponsive neurons and suppresses heat avoidance via bidirectional glutamatergic and peptidergic signaling

    This article has 2 authors:
    1. Saurabh Thapliyal
    2. Dominique A Glauser
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This important study shows how hunger alters avoidance of harmful heat in C. elegans by reconfiguring the activity of key sensory neurons. The evidence is convincing, with well-designed behavioural, genetic, and imaging experiments that support the main conclusions. The work will be of interest to neuroscientists studying how internal states shape sensory processing and behaviour across species.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  6. Adrenomedullin restores the human cortical interneurons migration defects induced by hypoxia

    This article has 14 authors:
    1. Alyssa Puno
    2. Wojciech P Michno
    3. Li Li
    4. Amanda Everitt
    5. Kate McCluskey
    6. Saw Htun
    7. Dhriti Nagar
    8. Jong Bin Choi
    9. Yuqin Dai
    10. Seyeon Park
    11. Emily Gurwitz
    12. A Jeremy Willsey
    13. Fikri Birey
    14. Anca M Pasca
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      In this manuscript, the authors investigate the migration of human cortical interneurons under hypoxic conditions using forebrain assembloids and developing human brain tissue, and probe the underlying mechanisms. The study provides the first direct evidence that hypoxia delays interneuron migration and identifies adrenomedullin (ADM) as a potential therapeutic intervention. The findings are important, and the conclusions are convincingly supported by experimental evidence.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  7. A Python Toolbox for Representational Similarity Analysis

    This article has 11 authors:
    1. Jasper JF van den Bosch
    2. Tal Golan
    3. Benjamin Peters
    4. JohnMark Taylor
    5. Mahdiyar Shahbazi
    6. Baihan Lin
    7. Ian Charest
    8. Jörn Diedrichsen
    9. Nikolaus Kriegeskorte
    10. Marieke Mur
    11. Heiko H Schütt
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study presents a new toolbox for Representational Similarity Analysis, representing a valuable contribution to the neuroscience community. The authors offer a well-integrated platform that brings together a range of state-of-the-art methodological advances within a convincing framework, with strong potential to enable more rigorous and insightful analyses of neural data across multiple subfields.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  8. Visual Working Memory Guides Attention Rhythmically

    This article has 3 authors:
    1. Jiachen Lu
    2. Yaochun Cai
    3. Xilin Zhang
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This valuable study reports evidence that items maintained in working memory can bias attention in an oscillatory manner, with the attentional capture effect fluctuating at theta frequency. The study provides incomplete evidence that this dynamic attentional bias is associated with oscillatory neural mechanisms, particularly in the alpha and theta bands, as measured by EEG. The study will be relevant for researchers studying attention, working memory, and neural oscillations, particularly those interested in how memory and perception interact over time.

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    This article has 6 evaluationsAppears in 1 listLatest version Latest activity
  9. Individuality across environmental context in Drosophila melanogaster

    This article has 7 authors:
    1. Thomas F Mathejczyk
    2. Cara Knief
    3. Muhammad A Haidar
    4. Florian Freitag
    5. Tydings McClary
    6. Mathias F Wernet
    7. Gerit A Linneweber
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      There is a growing interest in understanding the individuality of animal behaviours. In this important article, the authors build and use an impressive array of high throughput phenotyping paradigms to examine the 'stability' (consistency) of behavioural characteristics in a range of contexts and over time. The results show that certain behaviours are individualistic and persist robustly across external stimuli while others are less robust to these changing parameters. The data supporting their findings is extensive and convincing.

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    This article has 13 evaluationsAppears in 1 listLatest version Latest activity
  10. Longitudinal assessment of DREADD expression and efficacy in the monkey brain

    This article has 14 authors:
    1. Yuji Nagai
    2. Yukiko Hori
    3. Ken-ichi Inoue
    4. Toshiyuki Hirabayashi
    5. Koki Mimura
    6. Kei Oyama
    7. Naohisa Miyakawa
    8. Yuki Hori
    9. Haruhiko Iwaoki
    10. Katsushi Kumata
    11. Ming-Rong Zhang
    12. Masahiko Takada
    13. Makoto Higuchi
    14. Takafumi Minamimoto
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study provides novel and fundamental insights into the long-term use of DREADDs to modulate neuronal activity in nonhuman primates. The exceptional evidence demonstrates the peak dynamics and the subsequent stability of chemogenetic effects for 1.5 years, informing the experimental designs and the interpretation of highly impactful chemogenetic studies in macaques. The protocols, data, and outcomes can serve as guidelines for future experiments. Therefore, the findings will be of significant interest to the field of chemogenetics and may also be of broader interest to researchers and clinicians who seek to utilize viral vectors and/or related genetic technologies.

    Reviewed by eLife

    This article has 10 evaluationsAppears in 1 listLatest version Latest activity
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