1. Validation of scRNA-seq by scRT-ddPCR using the example of ErbB2 in MCF7 cells

    This article has 11 authors:
    1. Tobias Lange
    2. Tobias Groß
    3. Ábris Jeney
    4. Julia Scherzinger
    5. Elly Sinkala
    6. Christoph Niemöller
    7. Stefan Zimmermann
    8. Peter Koltay
    9. Felix von Stetten
    10. Roland Zengerle
    11. Csaba Jeney

    Reviewed by Review Commons

    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  2. Disruption of Smarce1, a component of the SWI/SNF chromatin remodeling complex, decreases nucleosome stability in mouse embryonic stem cells and impairs differentiation

    This article has 4 authors:
    1. Katsunobu Kashiwagi
    2. Junko Yoshida
    3. Hiroshi Kimura
    4. Kyoji Horie

    Reviewed by Review Commons

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  3. ATP induced conformational change of axonemal outer dynein arms studied by cryo-electron tomography

    This article has 4 authors:
    1. Noemi Zimmermann
    2. Akira Noga
    3. Jagan Mohan Obbineni
    4. Takashi Ishikawa

    Reviewed by Review Commons

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  4. The ADAM17 sheddase complex regulator iTAP/Frmd8 modulates inflammation and tumor growth

    This article has 10 authors:
    1. Marina Badenes
    2. Emma Burbridge
    3. Ioanna Oikonomidi
    4. Abdulbasit Amin
    5. Érika de Carvalho
    6. Lindsay Kosack
    7. Camila Mariano
    8. Pedro Domingos
    9. Pedro Faísca
    10. Colin Adrain

    Reviewed by Review Commons

    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  5. The establishment of variant surface glycoprotein monoallelic expression revealed by single-cell RNA-seq of Trypanosoma brucei in the tsetse fly salivary glands

    This article has 7 authors:
    1. Sebastian Hutchinson
    2. Sophie Foulon
    3. Aline Crouzols
    4. Roberta Menafra
    5. Brice Rotureau
    6. Andrew D. Griffiths
    7. Philippe Bastin
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      All reviewers think the study will be really valuable for the field, especially after re-writing to include a detailed comparison with results that were previously published. We all appreciate the clear identification of a gamete sub-population, and also thought that the discovery of low activation of all VSG expression sites was intriguing and will be of considerable interest to those in the field.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers all agreed to share their names with the authors.)

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  6. Antisense non-coding transcription represses the PHO5 model gene at the level of promoter chromatin structure

    This article has 7 authors:
    1. Ana Novačić
    2. Dario Menéndez
    3. Jurica Ljubas
    4. Slobodan Barbarić
    5. Françoise Stutz
    6. Julien Soudet
    7. Igor Stuparević

    Reviewed by Review Commons

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  7. Multiple UBX proteins reduce the ubiquitin threshold of the mammalian p97-UFD1-NPL4 unfoldase

    This article has 3 authors:
    1. Ryo Fujisawa
    2. Cristian Polo Rivera
    3. Karim PM Labib
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      This paper describes a biochemical analysis of the roles of Ub chain length on Ub-dependent segregase activity of yeast and human p97 and the role of UBX proteins on the disassembly of the CMG replicative helicase complex. The human p97 complex does not segregate substrates with shorter ubiquitin chains as efficiently as does the yeast complex but the human complex can be enhanced in vitro by 3 UBX proteins - FAF1, FAF2, and UBXN7. Cellular studies indicate a partial role for FAF1 and UBXN7 in cells. The paper would be strengthened by additional mechanistic understanding of how the UBX domain functions in activation of segregase activity and the contribution of this pathway in cells.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  8. The termination of UHRF1-dependent PAF15 ubiquitin signaling is regulated by USP7 and ATAD5

    This article has 16 authors:
    1. Ryota Miyashita
    2. Atsuya Nishiyama
    3. Weihua Qin
    4. Yoshie Chiba
    5. Satomi Kori
    6. Norie Kato
    7. Chieko Konishi
    8. Soichiro Kumamoto
    9. Hiroko Kozuka-Hata
    10. Masaaki Oyama
    11. Yoshitaka Kawasoe
    12. Toshiki Tsurimoto
    13. Tatsuro S Takahashi
    14. Heinrich Leonhardt
    15. Kyohei Arita
    16. Makoto Nakanishi
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      DNA methylation inheritance through the UHRF1-DNMT1 signaling axis is becoming increasingly appreciated as a ubiquitin-regulated process. This study builds on the observation that UHRF1 multi mono-ubiquitinates the PCNA-associated protein PAF15, and that, similarly to H3 substrates, these mono-ubiquitin sites are bound by DNMT1 and may contribute to its S-phase chromatin association. The authors focus on players involved in ubiquitin removal and PAF15 release from chromatin and they identify the deubiquitinase USP7 and the DNA replication regulator ATAD5 as important to this termination process. While manipulation of these factors using Xenopus egg extracts shows quite striking effects on DNMT1 chromatin association, effects on DNA methylation are minimal and this brings to question the importance and potential impact of the pathway involving PAF15. In addition, how the findings from Xenopus egg extracts translate to regulation of DNA methylation maintenance in mammalian cells is currently unclear.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 agreed to share their name with the authors.)

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  9. Chaperone requirements for de novo folding of Saccharomyces cerevisiae septins

    This article has 8 authors:
    1. Daniel Hassell
    2. Ashley Denney
    3. Emily Singer
    4. Aleyna Benson
    5. Andrew Roth
    6. Julia Ceglowski
    7. Marc Steingesser
    8. Michael McMurray

    Reviewed by Review Commons

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  10. Global chromatin mobility induced by a DSB is dictated by chromosomal conformation and defines the HR outcome

    This article has 7 authors:
    1. Fabiola García Fernández
    2. Etienne Almayrac
    3. Ànnia Carré Simon
    4. Renaud Batrin
    5. Yasmine Khalil
    6. Michel Boissac
    7. Emmanuelle Fabre
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      This study is of relevance to the field of DNA repair. It uses a cleverly designed new recombination assay in yeast to address the impact of DNA break position on global genome mobility. A centromere-proximal DNA double-strand break (DSB) induces an H2A(X) phosphorylation-dependent global mobility that accelerates but is not essential for DSB repair, while a centromere-distal DSB triggers global mobility that is essential for repair and which depends on H2A(X) phosphorylation, Rad9 and Rad51. Together, these data support a model where global genome mobility promotes homologous recombination repair, particularly for centromere-distal DSBs, and help settle some recent controversy in the field.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #3 agreed to share their name with the authors.)

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
Previous Page 36 of 73 Next