Genomics

  1. Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data

    1. Quan H. Nguyen
    2. Ross L. Tellam
    3. Marina Naval-Sanchez
    4. Laercio R. Porto-Neto
    5. William Barendse
    6. Antonio Reverter
    7. Benjamin Hayes
    8. James Kijas
    9. Brian P. Dalrymple

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation

    1. Jason R Miller
    2. Sergey Koren
    3. Kari A Dilley
    4. Vinita Puri
    5. David M Brown
    6. Derek M Harkins
    7. Françoise Thibaud-Nissen
    8. Benjamin Rosen
    9. Xiao-Guang Chen
    10. Zhijian Tu
    11. Igor V Sharakhov
    12. Maria V Sharakhova
    13. Robert Sebra
    14. Timothy B Stockwell
    15. Nicholas H Bergman
    16. Granger G Sutton
    17. Adam M Phillippy
    18. Peter M Piermarini
    19. Reed S Shabman

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

    1. Joshua Lynch
    2. Karen Tang
    3. Sambhawa Priya
    4. Joanna Sands
    5. Margaret Sands
    6. Evan Tang
    7. Sayan Mukherjee
    8. Dan Knights
    9. Ran Blekhman

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  4. Draft genome of the reindeer ( Rangifer tarandus )

    1. Zhipeng Li
    2. Zeshan Lin
    3. Hengxing Ba
    4. Lei Chen
    5. Yongzhi Yang
    6. Kun Wang
    7. Qiang Qiu
    8. Wen Wang
    9. Guangyu Li

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

    1. Aleksey V. Zimin
    2. Daniela Puiu
    3. Richard Hall
    4. Sarah Kingan
    5. Bernardo J. Clavijo
    6. Steven L. Salzberg

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Indexcov: fast coverage quality control for whole-genome sequencing

    1. Brent S. Pedersen
    2. Ryan L. Collins
    3. Michael E. Talkowski
    4. Aaron R. Quinlan

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

    1. Boris Simovski
    2. Daniel Vodak
    3. Sveinung Gundersen
    4. Diana Domanska
    5. Abdulrahman Azab
    6. Lars Holden
    7. Marit Holden
    8. Ivar Grytten
    9. Knut Rand
    10. Finn Drabløs
    11. Morten Johansen
    12. Antonio Mora
    13. Christin Lund-Andersen
    14. Bastian Fromm
    15. Ragnhild Eskeland
    16. Odd Stokke Gabrielsen
    17. Sigve Nakken
    18. Mads Bengtsen
    19. Alexander Johan Nederbragt
    20. Hildur Sif Thorarensen
    21. Johannes Andreas Akse
    22. Ingrid Glad
    23. Eivind Hovig
    24. Geir Kjetil Sandve

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

    1. Marco A. Albuquerque
    2. Bruno M. Grande
    3. Elie J. Ritch
    4. Selin Jessa
    5. Martin Krzywinski
    6. Jasleen K. Grewal
    7. Sohrab P. Shah
    8. Paul C. Boutros
    9. Ryan D. Morin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

    1. Judith Risse
    2. Marian Thomson
    3. Garry Blakely
    4. Georgios Koutsovoulos
    5. Mark Blaxter
    6. Mick Watson

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

    1. Vikas Gupta
    2. April D. Estrada
    3. Ivory Blakley
    4. Rob Reid
    5. Ketan Patel
    6. Mason D. Meyer
    7. Stig Uggerhøj Andersen
    8. Allan F. Brown
    9. Mary Ann Lila
    10. Ann E. Loraine

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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