1. A theory of synaptic transmission

    This article has 2 authors:
    1. Bin Wang
    2. Olga K Dudko
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      The present MS describes an effort to create a general mathematical model of synaptic neurotransmission. The authors invested great efforts to create a complex model of the presynaptic mechanisms. This is an exceptionally challenging task and it falls short of a true general theory. Nonetheless, the model will be an important addition to an emerging field attempting to generate predictive models of complex neuronal biophysical processes, including synaptic transmission.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript.The reviewers remained anonymous to the authors.)

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  2. Structural basis for substrate selection by the SARS-CoV-2 replicase

    This article has 19 authors:
    1. Brandon F. Malone
    2. Jason K. Perry
    3. Paul Dominic B. Olinares
    4. Hery W. Lee
    5. James Chen
    6. Todd C. Appleby
    7. Joy Y. Feng
    8. John P. Bilello
    9. Honkit Ng
    10. Johanna Sotiris
    11. Mark Ebrahim
    12. Eugene Y. D. Chua
    13. Joshua H. Mendez
    14. Ed T. Eng
    15. Robert Landick
    16. Matthias Götte
    17. Brian T. Chait
    18. Elizabeth A. Campbell
    19. Seth A. Darst

    Reviewed by ScreenIT

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  3. Revealing druggable cryptic pockets in the Nsp1 of SARS-CoV-2 and other β-coronaviruses by simulations and crystallography

    This article has 9 authors:
    1. Alberto Borsatto
    2. Obaeda Akkad
    3. Ioannis Galdadas
    4. Shumeng Ma
    5. Shymaa Damfo
    6. Shozeb Haider
    7. Frank Kozielski
    8. Carolina Estarellas
    9. Francesco Luigi Gervasio
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      SARS-CoV-2 nonstructural protein (Nsp1) has emerged as an attractive target as it plays an important role in modulating the host and viral gene expression. This study describes multiple druggable sites in Nsp1. A 1.1Å co-crystal structure of Nsp1 with a fragment, together with computational studies, provides a framework for the rational design of potential antiviral candidates. This important study is methodologically convincing and will be of interest to researchers in the fields of structural virology and rational drug design.

    Reviewed by eLife, ScreenIT

    This article has 6 evaluationsAppears in 3 listsLatest version Latest activity
  4. Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia

    This article has 8 authors:
    1. Christa Ringers
    2. Stephan Bialonski
    3. Mert Ege
    4. Anton Solovev
    5. Jan Niklas Hansen
    6. Inyoung Jeong
    7. Benjamin M Friedrich
    8. Nathalie Jurisch-Yaksi
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      This is a comprehensive, in vivo study of motile cilia dynamics, organisation and coordination in the larval zebrafish nose. The authors used a combination of highly quantitative imaging methods and transgenics to visualise the properties of multiciliated cells in this model organism - with particular emphasis on measuring the spatiotemporal coherence and organisation of cilia across the organ, and on the discovery of large-scale metachronal waves. With the aid of a computational model, the authors also explored the implications of metachronal ciliary action for fluid pumping.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  5. Motor processivity and speed determine structure and dynamics of microtubule-motor assemblies

    This article has 9 authors:
    1. Rachel A Banks
    2. Vahe Galstyan
    3. Heun Jin Lee
    4. Soichi Hirokawa
    5. Athena Ierokomos
    6. Tyler D Ross
    7. Zev Bryant
    8. Matt Thomson
    9. Rob Phillips
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      This study investigates on how weight loss by bariatric surgery or weight-matched dietary intervention impairs breast cancer growth as well as immunotherapy. This study can potentially provide some therapeutic intervention strategies on combining vertical sleeve gastrectomy and immunotherapy in treating breast cancer.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  6. In situ architecture and membrane fusion of SARS-CoV-2 Delta variant

    This article has 16 authors:
    1. Yutong Song
    2. Hangping Yao
    3. Nanping Wu
    4. Jialu Xu
    5. Zheyuan Zhang
    6. Cheng Peng
    7. Shibo Li
    8. Weizheng Kong
    9. Yong Chen
    10. Miaojin Zhu
    11. Jiaqi Wang
    12. Danrong Shi
    13. Chongchong Zhao
    14. Xiangyun Lu
    15. Martín Echavarría Galindo
    16. Sai Li

    Reviewed by ScreenIT

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  7. Effect on the conformations of the spike protein of SARS‐CoV‐2 due to mutation

    This article has 2 authors:
    1. Aayatti Mallick Gupta
    2. Jaydeb Chakrabarti

    Reviewed by ScreenIT

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  8. Structural basis of ion – substrate coupling in the Na+-dependent dicarboxylate transporter VcINDY

    This article has 6 authors:
    1. David B. Sauer
    2. Jennifer J. Marden
    3. Joseph C. Sudar
    4. Jinmei Song
    5. Christopher Mulligan
    6. Da-Neng Wang
    This article has been curated by 1 group:
    • Curated by Biophysics Colab

      Endorsement statement (28 June 2022)

      Sauer et al. describe two cryo-EM structures of the Na+-dependent dicarboxylate transporter VcINDY in two inward-facing states. The high-quality structural data, complemented by NMR-inspired analysis, functional assays and cysteine accessibility measurements, reveal crucial conformational changes induced by Na+ binding to apo VcINDY that result in formation of the substrate-binding site. This is a strong manuscript that provides an important contribution to our understanding of the transport mechanism in the SLC13/DASS family of transporters, several members of which have critical physiological functions. The work will be of interest to researchers working on this and other ion-coupled transporter families.

      (This endorsement by Biophysics Colab refers to the version of record for this work, which is linked to and has been revised from the original preprint following peer review.)

    Reviewed by Biophysics Colab

    This article has 3 evaluationsAppears in 3 listsLatest version Latest activity
  9. The role of surface adhesion on the macroscopic wrinkling of biofilms

    This article has 3 authors:
    1. Steffen Geisel
    2. Eleonora Secchi
    3. Jan Vermant
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      The wrinkling of growing biofilms is considered in this paper experimentally in a clever set of experiments in a microfluidic setup that reveals aspects of the onset of the wrinkling instability and the formation of hollow channels within which bacteria move. Variations in the adhesive properties of the underlying surface are shown to affect the instability. While the results will surely be of interest to researchers in a range of areas, the connection with theoretical results needs further development.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. The reviewers remained anonymous to the authors.)

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  10. On the origin of universal cell shape variability in confluent epithelial monolayers

    This article has 2 authors:
    1. Souvik Sadhukhan
    2. Saroj Kumar Nandi
    This article has been curated by 1 group:
    • Curated by eLife

      Evaluation Summary:

      By theoretically analysing the energy of a confluent epithelial tissue, the authors unveil the reason for nearly universal shape fluctuations that have been reported earlier. With a better justification of some of the underlying approximations used by the authors, the manuscript would be relevant for all people with an interest in tissue structure and dynamics.

      (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #2 agreed to share their name with the authors.)

    Reviewed by eLife

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
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