Bioinformatics

  1. Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches

    1. Bryan Thornlow
    2. Alexander Kramer
    3. Cheng Ye
    4. Nicola De Maio
    5. Jakob McBroome
    6. Angie S. Hinrichs
    7. Robert Lanfear
    8. Yatish Turakhia
    9. Russell Corbett-Detig

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  2. T cell receptor repertoire signatures associated with COVID-19 severity

    1. Jonathan J. Park
    2. Kyoung A V. Lee
    3. Stanley Z. Lam
    4. Sidi Chen

    Reviewed by PREreview, ScreenIT

    2 evaluationsAppears in 2 listsLatest version Latest activity

  3. Development of Web Application for the Comparison of Segment Variability with Sequence Evolution and Immunogenic Properties for Highly Variable Proteins: An Application to Viruses

    1. Sumit Bala
    2. Ambarnil Ghosh
    3. Subhra Pradhan

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Investigating the human host - ssRNA virus interaction landscape using the SMEAGOL toolbox

    1. Avantika Lal
    2. Mariana Galvao Ferrarini
    3. Andreas J. Gruber

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  5. Variance in Variants: Propagating Genome Sequence Uncertainty into Phylogenetic Lineage Assignment

    1. David Champredon
    2. Devan Becker
    3. Connor Chato
    4. Gopi Gugan
    5. Art Poon

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Th1, Th2 and Th17 inflammatory pathways synergistically correlate with cardiometabolic processes. A case study in COVID-19

    1. James R. Michels
    2. Mohammad Shaheed Nazrul
    3. Sudeep Adhikari
    4. Dawn Wilkins
    5. Ana B. Pavel

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  7. sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs

    1. Andrea Di Gioacchino
    2. Rachel Legendre
    3. Yannis Rahou
    4. Valérie Najburg
    5. Pierre Charneau
    6. Benjamin D. Greenbaum
    7. Frédéric Tangy
    8. Sylvie van der Werf
    9. Simona Cocco
    10. Anastassia V. Komarova

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons

    1. Philip L. Tzou
    2. Kaiming Tao
    3. Sergei L. Kosakovsky Pond
    4. Robert W. Shafer

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Conserved recombination patterns across coronavirus subgenera

    1. Arné de Klerk
    2. Phillip Swanepoel
    3. Rentia Lourens
    4. Mpumelelo Zondo
    5. Isaac Abodunran
    6. Spyros Lytras
    7. Oscar A MacLean
    8. David Robertson
    9. Sergei L Kosakovsky Pond
    10. Jordan D Zehr
    11. Venkatesh Kumar
    12. Michael J Stanhope
    13. Gordon Harkins
    14. Ben Murrell
    15. Darren P Martin

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Immune escape facilitation by mutations of epitope residues in RdRp of SARS-CoV-2

    1. Aayatti Mallick Gupta
    2. SasthiCharan Mandal
    3. Sukhendu Mandal
    4. Jaydeb Chakrabarti

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity
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